Compositions and methods for modulating pten expression

ABSTRACT

Aspects of the invention provide single stranded oligonucleotides for activating or enhancing expression of PTEN. Further aspects provide compositions and kits comprising single stranded oligonucleotides for activating or enhancing expression of PTEN. Methods for modulating expression of PTEN using the single stranded oligonucleotides are also provided. Further aspects of the invention provide methods for selecting a candidate oligonucleotide for activating or enhancing expression of PTEN.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims the benefit under 35 U.S.C. §119(e) of U.S. Provisional Application No. 61/785,885, entitled “COMPOSITIONS AND METHODS FOR MODULATING PTEN EXPRESSION”, filed Mar. 14, 2013 and U.S. Provisional Application No. 61/648,041, entitled “COMPOSITIONS AND METHODS FOR MODULATING PTEN EXPRESSION”, filed May 16, 2012, each of which is incorporated herein by reference in its entirety.

FIELD OF THE INVENTION

The invention relates to oligonucleotide based compositions, as well as methods of using oligonucleotide based compositions for treating disease.

BACKGROUND OF THE INVENTION

Cancer includes a multitude of diseases characterized by uncontrolled growth of cells in an individual, which can ultimately result in morbidity and mortality. In 2008, over 7.6 million people died from cancer worldwide, accounting for approximately 13% of all deaths in the world. Cancer is one of the highest priority public health concerns, with over 12 million cases in the United States alone causing an economic impact of over 225 billion dollars in direct and indirect medical costs.

Phosphatase and tensin homolog (PTEN) is one of the most common tumor suppressors involved in the development of cancer. PTEN controls cell growth and apoptosis, as well as genomic instability, cell migration, and metabolism. Mutations in the PTEN gene cause inactivation of PTEN protein and/or reduction in levels of PTEN protein, resulting in uncontrolled cell growth that leads to cancer. PTEN mutations occur at high frequency in many cancers, making it an important target for cancer treatment.

SUMMARY OF THE INVENTION

Aspects of the invention disclosed herein provide methods and compositions that are useful for upregulating PTEN in cells. In some embodiments, single stranded oligonucleotides are provided that target a PRC2-associated region of a PTEN gene (e.g., human PTEN) and thereby cause upregulation of the gene. In some embodiments, single stranded oligonucleotides are provided that target a PRC2-associated region of the gene encoding PTEN. In some embodiments, these single stranded oligonucleotides activate or enhance expression of PTEN by relieving or preventing PRC2 mediated repression of PTEN. Aspects of the invention disclosed herein, provide methods and compositions that are useful for upregulating certain tumor suppressor genes. In some embodiments, the methods and compositions for upregulating PTEN expression disclosed herein provide alternative approaches for treating cancer, such as prostate or breast cancer.

Further aspects of the invention provide methods for selecting oligonucleotides for activating or enhancing expression of PTEN. In some embodiments, methods are provided for selecting a set of oligonucleotides that is enriched in candidates (e.g., compared with a random selection of oligonucleotides) for activating or enhancing expression of PTEN. Accordingly, the methods may be used to establish sets of clinical candidates that are enriched in oligonucleotides that activate or enhance expression of PTEN. Such libraries may be utilized, for example, to identify lead oligonucleotides for developing therapeutics to treat PTEN. Furthermore, in some embodiments, oligonucleotide chemistries are provided that are useful for controlling the pharmacokinetics, biodistribution, bioavailability and/or efficacy of the single stranded oligonucleotides for activating expression of PTEN.

According to some aspects of the invention single stranded oligonucleotides are provided that have a region of complementarity that is complementarty with (e.g., at least 8 consecutive nucleotides of) a PRC2-associated region of a PTEN gene, e.g., a PRC2-associated region of the nucleotide sequence set forth as SEQ ID NO: 1 or 2. In some embodiments, the oligonucleotide has at least one of the following features: a) a sequence that is 5′X-Y-Z, in which X is any nucleotide and in which X is at the 5′ end of the oligonucleotide, Y is a nucleotide sequence of 6 nucleotides in length that is not a human seed sequence of a microRNA, and Z is a nucleotide sequence of 1 to 23 nucleotides in length; b) a sequence that does not comprise three or more consecutive guanosine nucleotides; c) a sequence that has less than a threshold level of sequence identity with every sequence of nucleotides, of equivalent length to the second nucleotide sequence, that are between 50 kilobases upstream of a 5′-end of an off-target gene and 50 kilobases downstream of a 3′-end of the off-target gene; d) a sequence that is complementary to a PRC2-associated region that encodes an RNA that forms a secondary structure comprising at least two single stranded loops; and e) a sequence that has greater than 60% G-C content. In some embodiments, the single stranded oligonucleotide has at least two of features a), b), c), d), and e), each independently selected. In some embodiments, the single stranded oligonucleotide has at least three of features a), b), c), d), and e), each independently selected. In some embodiments, the single stranded oligonucleotide has at least four of features a), b), c), d), and e), each independently selected. In some embodiments, the single stranded oligonucleotide has each of features a), b), c), d), and e). In certain embodiments, the oligonucleotide has the sequence 5′X-Y-Z, in which the oligonucleotide is 8-50 nucleotides in length.

According to some aspects of the invention, single stranded oligonucleotides are provided that have a sequence X-Y-Z, in which X is any nucleotide, Y is a nucleotide sequence of 6 nucleotides in length that is not a seed sequence of a human microRNA, and Z is a nucleotide sequence of 1 to 23 nucleotides in length, in which the single stranded oligonucleotide is complementary with a PRC2-associated region of a PTEN gene, e.g., a PRC2-associated region of the nucleotide sequence set forth as SEQ ID NO: 1 or 2. In some aspects of the invention, single stranded oligonucleotides are provided that have a sequence 5′-X-Y-Z, in which X is any nucleotide, Y is a nucleotide sequence of 6 nucleotides in length that is not a seed sequence of a human microRNA, and Z is a nucleotide sequence of 1 to 23 nucleotides in length, in which the single stranded oligonucleotide is complementary with at least 8 consecutive nucleotides of a PRC2-associated region of a PTEN gene, e.g., a PRC2-associated region of the nucleotide sequence set forth as SEQ ID NO: 1 or 2. In some embodiments, Y is a sequence selected from Table 1. In some embodiments, the PRC2-associated region is a sequence listed in any one of SEQ ID NOS: 5 to 148.

In some embodiments, the single stranded oligonucleotide comprises a nucleotide sequence as set forth in any one of SEQ ID NOS: 149 to 89025, or a fragment thereof that is at least 8 nucleotides. In some embodiments, the single stranded oligonucleotide comprises a nucleotide sequence as set forth in any one of SEQ ID NOS: 149 to 89025, in which the 5′ end of the nucleotide sequence provided is the 5′ end of the oligonucleotide. In some embodiments, the region of complementarity (e.g., the at least 8 consecutive nucleotides) is also present within the nucleotide sequence set forth as SEQ ID NO: 3 or 4.

In some embodiments, the single stranded oligonucleotide comprises a nucleotide sequence as set forth in any one of SEQ ID NOS: 149 to 89025. In some embodiments, the single stranded oligonucleotide comprises a fragment of at least 8 nucleotides of a nucleotide sequence as set forth in any one of SEQ ID NOS: 149 to 89025.

In some embodiments, the PRC2-associated region is a sequence listed in any one of SEQ ID NOS: 5 to 118. In some embodiments, the single stranded oligonucleotide comprises a nucleotide sequence as set forth in any one of SEQ ID NOS: 149 to 63340, 89008 to 89021, or 89024 to 89025 or a fragment thereof that is at least 8 nucleotides. In some embodiments, the single stranded oligonucleotide comprises a nucleotide sequence as set forth in any one of SEQ ID NOS: 149 to 63340, 89008 to 89021, or 89024 to 89025, wherein the 5′ end of the nucleotide sequence provided in any one of SEQ ID NOS: 149 to 63340, 89008 to 89021, or 89024 to 89025 is the 5′ end of the oligonucleotide. In some embodiments, the at least 8 consecutive nucleotides are also present within the nucleotide sequence set forth as SEQ ID NO: 3.

In some embodiments, the PRC2-associated region is a sequence listed in any one of SEQ ID NOS: 119 to 148. In some embodiments, the single stranded oligonucleotide comprises a nucleotide sequence as set forth in any one of SEQ ID NOS: 63196 to 89007 or 89020 to 89025 or a fragment thereof that is at least 8 nucleotides. In some embodiments, the single stranded oligonucleotide comprises a nucleotide sequence as set forth in any one of SEQ ID NOS: 63196 to 89007 or 89020 to 89025, wherein the 5′ end of the nucleotide sequence provided in any one of SEQ ID NOS: 63196 to 89007 or 89020 to 89025 is the 5′ end of the oligonucleotide. In some embodiments, the at least 8 consecutive nucleotides are present within the nucleotide sequence set forth as SEQ ID NO: 4.

In some embodiments, a single stranded oligonucleotide comprises a nucleotide sequence as set forth in Table 4. In some embodiments, the single stranded oligonucleotide comprises a fragment of at least 8 nucleotides of a nucleotide sequence as set forth in Table 4. In some embodiments, a single stranded oligonucleotide consists of a nucleotide sequence as set forth in Table 4.

In some embodiments, the single stranded oligonucleotide does not comprise three or more consecutive guanosine nucleotides. In some embodiments, the single stranded oligonucleotide does not comprise four or more consecutive guanosine nucleotides.

In some embodiments, the single stranded oligonucleotide is 8 to 30 nucleotides in length. In some embodiments, the single stranded oligonucleotide is up to 50 nucleotides in length. In some embodiments, the single stranded oligonucleotide is 8 to 10 nucleotides in length and all but 1, 2, or 3 of the nucleotides of the complementary sequence of the PRC2-associated region are cytosine or guanosine nucleotides.

In some embodiments, the single stranded oligonucleotide is complementary with at least 8 consecutive nucleotides of a PRC2-associated region of a PTEN gene, e.g., a PRC2-associated region of a nucleotide sequence set forth as SEQ ID NO: 1 or 2, in which the nucleotide sequence of the single stranded oligonucleotide comprises one or more of a nucleotide sequence selected from the group consisting of

(a) (X)Xxxxxx, (X)xXxxxx, (X)xxXxxx, (X)xxxXxx, (X)xxxxXx and (X)xxxxxX,

(b) (X)XXxxxx, (X)XxXxxx, (X)XxxXxx, (X)XxxxXx, (X)XxxxxX, (X)xXXxxx, (X)xXxXxx, (X)xXxxXx, (X)xXxxxX, (X)xxXXxx, (X)xxXxXx, (X)xxXxxX, (X)xxxXXx, (X)xxxXxX and (X)xxxxXX,

(c) (X)XXXxxx, (X)xXXXxx, (X)xxXXXx, (X)xxxXXX, (X)XXxXxx, (X)XXxxXx, (X)XXxxxX, (X)xXXxXx, (X)xXXxxX, (X)xxXXxX, (X)XxXXxx, (X)XxxXXx (X)XxxxXX, (X)xXxXXx, (X)xXxxXX, (X)xxXxXX, (X)xXxXxX and (X)XxXxXx, (d) (X)xxXXX, (X)xXxXXX, (X)xXXxXX, (X)xXXXxX, (X)xXXXXx,

(X)XxxXXXX, (X)XxXxXX, (X)XxXXxX, (X)XxXXx, (X)XXxxXX, (X)XXxXxX, (X)XXxXXx, (X)XXXxxX, (X)XXXxXx, and (X)XXXXxx,

(e) (X)xXXXXX, (X)XxXXXX, (X)XXxXXX, (X)XXXxXX, (X)XXXXxX and (X)XXXXXx, and

(f) XXXXXX, XxXXXXX, XXxXXXX, XXXxXXX, XXXXxXX, XXXXXxX and XXXXXXx, wherein “X” denotes a nucleotide analogue, (X) denotes an optional nucleotide analogue, and “x” denotes a DNA or RNA nucleotide unit. In some embodiments, at least one nucleotide of the oligonucleotide is a nucleotide analogue. In some embodiments, the at least one nucleotide analogue results in an increase in Tm of the oligonucleotide in a range of 1 to 5° C. compared with an oligonucleotide that does not have the at least one nucleotide analogue.

In some embodiments, at least one nucleotide of the oligonucleotide comprises a 2′ O-methyl. In some embodiments, each nucleotide of the oligonucleotide comprises a 2′ O-methyl. In some embodiments, the oligonucleotide comprises at least one ribonucleotide, at least one deoxyribonucleotide, or at least one bridged nucleotide. In some embodiments, the bridged nucleotide is a LNA nucleotide, a cEt nucleotide or a ENA modified nucleotide. In some embodiments, each nucleotide of the oligonucleotide is a LNA nucleotide.

In some embodiments, the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and 2′-fluoro-deoxyribonucleotides. In some embodiments, the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and 2′-O-methyl nucleotides. In some embodiments, the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and ENA nucleotide analogues. In some embodiments, the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and LNA nucleotides. In some embodiments, the 5′ nucleotide of the oligonucleotide is a deoxyribonucleotide. In some embodiments, the nucleotides of the oligonucleotide comprise alternating LNA nucleotides and 2′-O-methyl nucleotides. In some embodiments, the 5′ nucleotide of the oligonucleotide is a LNA nucleotide. In some embodiments, the nucleotides of the oligonucleotide comprise deoxyribonucleotides flanked by at least one LNA nucleotide on each of the 5′ and 3′ ends of the deoxyribonucleotides.

In some embodiments, the single stranded oligonucleotide comprises modified internucleotide linkages (e.g., phosphorothioate internucleotide linkages or other linkages) between at least two, at least three, at least four, at least five or more nucleotides. In some embodiments, the single stranded oligonucleotide comprises modified internucleotide linkages (e.g., phosphorothioate internucleotide linkages or other linkages) between all nucleotides.

In some embodiments, the nucleotide at the 3′ position of the oligonucleotide has a 3′ hydroxyl group. In some embodiments, the nucleotide at the 3′ position of the oligonucleotide has a 3′ thiophosphate. In some embodiments, the single stranded oligonucleotide has a biotin moiety or other moiety conjugated to its 5′ or 3′ nucleotide. In some embodiments, the single stranded oligonucleotide has cholesterol, Vitamin A, folate, sigma receptor ligands, aptamers, peptides, such as CPP, hydrophobic molecules, such as lipids, ASGPR or dynamic polyconjugates and variants thereof at its 5′ or 3′ end.

According to some aspects of the invention compositions are provided that comprise any of the oligonucleotides disclosed herein, and a carrier. In some embodiments, compositions are provided that comprise any of the oligonucleotides in a buffered solution. In some embodiments, the oligonucleotide is conjugated to the carrier. In some embodiments, the carrier is a peptide. In some embodiments, the carrier is a steroid. According to some aspects of the invention pharmaceutical compositions are provided that comprise any of the oligonucleotides disclosed herein, and a pharmaceutically acceptable carrier.

According to other aspects of the invention, kits are provided that comprise a container housing any of the compositions disclosed herein.

According to some aspects of the invention, methods of increasing expression of PTEN in a cell are provided. In some embodiments, the methods involve delivering any one or more of the single stranded oligonucleotides disclosed herein into the cell. In some embodiments, delivery of the single stranded oligonucleotide into the cell results in a level of expression of PTEN that is greater (e.g., at least 50% greater) than a level of expression of PTEN in a control cell that does not comprise the single stranded oligonucleotide.

According to some aspects of the invention, methods of increasing levels of PTEN in a subject are provided. According to some aspects of the invention, methods of treating a condition (e.g., cancer) associated with decreased levels of PTEN in a subject are provided. In some embodiments, the methods involve administering any one or more of the single stranded oligonucleotides disclosed herein to the subject.

BRIEF DESCRIPTION OF DRAWINGS

FIG. 1 is a graph depecting the level of PTEN expression in HepG2 cells treated with oligos relative to cells receiving no oligos. The PTEN expression was measured by pRTPCR for oligos named PTEN-41 to PTEN-70 as set forth in Table 4. The oligo concentration was 30 nM and the time of the experiment was 48 hours. The housekeeping gene used for the qRTPCR control was PPIB.

FIG. 2 is a graph depecting the level of PTEN expression in HepG2 cells treated with oligos relative to cells receiving no oligos. The PTEN expression was measured by pRTPCR for oligos named PTEN-71 to PTEN-100 as set forth in Table 4. The oligo concentration was 30 nM and the time of the experiment was 48 hours. The housekeeping gene used for the qRTPCR control was PPIB.

BRIEF DESCRIPTION OF TABLES

Table 1: Hexamers that are not seed sequences of human miRNAs

Table 2: Oligonucleotide sequences made for testing in the lab. RQ (column 3) and RQ SE (column 4) shows the activity of the oligo relative to a control well (usually carrier alone) and the standard error or the triplicate replicates of the experiment. [oligo] is shown in nanomolar for in vitro experiments and in milligrams per kilogram of body weight for in vivo experiments. The sequence of each oligonucleotide, including any modified nucleotides, is shown in Table 4.

Table 3: A listing of oligonucleotide modifications

Table 4: Formatted oligonucleotide sequences made for testing showing nucleotide modifications. The table shows the sequence of the modified nucleotides, where lnaX represents an LNA nucleotide with 3′ phosphorothioate linkage, omeX is a 2′-O-methyl nucleotide, dX is a deoxy nucleotide. An s at the end of a nucleotide code indicates that the nucleotide had a 3′ phosphorothioate linkage. The “-Sup” at the end of the sequence marks the fact that the 3′ end lacks either a phosphate or thiophosphate on the 3′ linkage. The Formatted Sequence column shows the sequence of the oligonucleotide, including modified nucleotides, for the oligonucleotides tested in Table 2.

Table 5: Cell lines

DETAILED DESCRIPTION OF CERTAIN EMBODIMENTS OF THE INVENTION

Aspects of the invention provided herein relate to the discovery of polycomb repressive complex 2 (PRC2)-interacting RNAs. Polycomb repressive complex 2 (PRC2) is a histone methyltransferase and a known epigenetic regulator involved in silencing of genomic regions through methylation of histone H3. Among other functions, PRC2 interacts with long noncoding RNAs (lncRNAs), such as RepA, Xist, and Tsix, to catalyze trimethylation of histone H3-lysine27. PRC2 contains four subunits, Eed, Suz12, RbAp48, and Ezh2. Aspects of the invention relate to the recognition that single stranded oligonucleotides that bind to PRC2-associated regions of RNAs (e.g., lncRNAs) that are expressed from within a genomic region that encompasses or that is in functional proximity to the PTEN gene can induce or enhance expression of PTEN. In some embodiments, this upregulation is believed to result from inhibition of PRC2 mediated repression of PTEN.

As used herein, the term “PRC2-associated region” refers to a region of a nucleic acid that comprises or encodes a sequence of nucleotides that interact directly or indirectly with a component of PRC2. A PRC2-associated region may be present in a RNA (e.g., a long non-coding RNA (lncRNA)) that that interacts with a PRC2. A PRC2-associated region may be present in a DNA that encodes an RNA that interacts with PRC2. In some cases, the PRC2-associated region is equivalently referred to as a PRC2-interacting region.

In some embodiments, a PRC2-associated region is a region of an RNA that crosslinks to a component of PRC2 in response to in situ ultraviolet irradiation of a cell that expresses the RNA, or a region of genomic DNA that encodes that RNA region. In some embodiments, a PRC2-associated region is a region of an RNA that immunoprecipitates with an antibody that targets a component of PRC2, or a region of genomic DNA that encodes that RNA region. In some embodiments, a PRC2-associated region is a region of an RNA that immunoprecipitates with an antibody that binds specifically to SUZ12, EED, EZH2 or RBBP4 (which as noted above are components of PRC2), or a region of genomic DNA that encodes that RNA region.

In some embodiments, a PRC2-associated region is a region of an RNA that is protected from nucleases (e.g., RNases) in an RNA-immunoprecipitation assay that employs an antibody that targets a component of PRC2, or a region of genomic DNA that encodes that protected RNA region. In some embodiments, a PRC2-associated region is a region of an RNA that is protected from nucleases (e.g., RNases) in an RNA-immunoprecipitation assay that employs an antibody that targets SUZ12, EED, EZH2 or RBBP4, or a region of genomic DNA that encodes that protected RNA region.

In some embodiments, a PRC2-associated region is a region of an RNA within which occur a relatively high frequency of sequence reads in a sequencing reaction of products of an RNA-immunoprecipitation assay that employs an antibody that targets a component of PRC2, or a region of genomic DNA that encodes that RNA region. In some embodiments, a PRC2-associated region is a region of an RNA within which occur a relatively high frequency of sequence reads in a sequencing reaction of products of an RNA-immunoprecipitation assay that employs an antibody that binds specifically to SUZ12, EED, EZH2 or RBBP4, or a region of genomic DNA that encodes that protected RNA region. In such embodiments, the PRC2-associated region may be referred to as a “peak.”

In some embodiments, a PRC2-associated region comprises a sequence of 40 to 60 nucleotides that interact with PRC2 complex. In some embodiments, a PRC2-associated region comprises a sequence of 40 to 60 nucleotides that encode an RNA that interacts with PRC2. In some embodiments, a PRC2-associated region comprises a sequence of up to 5 kb in length that comprises a sequence (e.g., of 40 to 60 nucleotides) that interacts with PRC2. In some embodiments, a PRC2-associated region comprises a sequence of up to 5 kb in length within which an RNA is encoded that has a sequence (e.g., of 40 to 60 nucleotides) that is known to interact with PRC2. In some embodiments, a PRC2-associated region comprises a sequence of about 4 kb in length that comprise a sequence (e.g., of 40 to 60 nucleotides) that interacts with PRC2. In some embodiments, a PRC2-associated region comprises a sequence of about 4 kb in length within which an RNA is encoded that includes a sequence (e.g., of 40 to 60 nucleotides) that is known to interact with PRC2. In some embodiments, a PRC2-associated region has a sequence as set forth in any one of SEQ ID NOS: 5 to 148.

In some embodiments, single stranded oligonucleotides are provided that specifically bind to, or are complementary to, a PRC2-associated region in a genomic region that encompasses or that is in proximity to the PTEN gene. In some embodiments, single stranded oligonucleotides are provided that specifically bind to, or are complementary to, a PRC2-associated region that has a sequence as set forth in any one of SEQ ID NOS: 5 to 148. In some embodiments, single stranded oligonucleotides are provided that specifically bind to, or are complementary to, a PRC2-associated region that has a sequence as set forth in any one of SEQ ID NOS: 5 to 148 combined with up to 2 kb, up to 5 kb, or up to 10 kb of flanking sequences from a corresponding genomic region to which these SEQ IDs map (e.g., in a human genome). In some embodiments, single stranded oligonucleotides have a sequence as set forth in any one of SEQ ID NOS: 149 to 89025. In some embodiments, single stranded oligonucleotides have a sequence as set forth in Table 4.

Without being bound by a theory of invention, these oligonucleotides are able to interfere with the binding of and function of PRC2, by preventing recruitment of PRC2 to a specific chromosomal locus. For example, a single administration of single stranded oligonucleotides designed to specifically bind a PRC2-associated region lncRNA can stably displace not only the lncRNA, but also the PRC2 that binds to the lncRNA, from binding chromatin. After displacement, the full complement of PRC2 is not recovered for up to 24 hours. Further, lncRNA can recruit PRC2 in a cis fashion, repressing gene expression at or near the specific chromosomal locus from which the lncRNA was transcribed.

Methods of modulating gene expression are provided, in some embodiments, that may be carried out in vitro, ex vivo, or in vivo. It is understood that any reference to uses of compounds throughout the description contemplates use of the compound in preparation of a pharmaceutical composition or medicament for use in the treatment of condition (e.g., cancer) associated with decreased levels or activity of PTEN. Thus, as one nonlimiting example, this aspect of the invention includes use of such single stranded oligonucleotides in the preparation of a medicament for use in the treatment of disease, wherein the treatment involves upregulating expression of PTEN.

In further aspects of the invention, methods are provided for selecting a candidate oligonucleotide for activating expression of PTEN. The methods generally involve selecting as a candidate oligonucleotide, a single stranded oligonucleotide comprising a nucleotide sequence that is complementary to a PRC2-associated region (e.g., a nucleotide sequence as set forth in any one of SEQ ID NOS: 5 to 148). In some embodiments, sets of oligonucleotides may be selected that are enriched (e.g., compared with a random selection of oligonucleotides) in oligonucleotides that activate expression of PTEN.

Single Stranded Oligonucleotides for Modulating Expression of PTEN

In one aspect of the invention, single stranded oligonucleotides complementary to the PRC2-associated regions are provided for modulating expression of PTEN in a cell. In some embodiments, expression of PTEN is upregulated or increased. In some embodiments, single stranded oligonucleotides complementary to these PRC2-associated regions inhibit the interaction of PRC2 with long RNA transcripts such that gene expression is upregulated or increased. In some embodiments, single stranded oligonucleotides complementary to these PRC2-associated regions inhibit the interaction of PRC2 with long RNA transcripts, resulting in reduced methylation of histone H3 and reduced gene inactivation, such that gene expression is upregulated or increased. In some embodiments, this interaction may be disrupted or inhibited due to a change in the structure of the long RNA that prevents or reduces binding to PRC2. The oligonucleotide may be selected using any of the methods disclosed herein for selecting a candidate oligonucleotide for activating expression of PTEN.

The single stranded oligonucleotide may comprise a region of complementarity that is complementary with a PRC2-associated region of a nucleotide sequence set forth in any one of SEQ ID NOS: 1 to 4. The region of complementarity of the single stranded oligonucleotide may be complementary with at least 6, e.g., at least 7, at least 8, at least 9, at least 10, at least 15 or more consecutive nucleotides of the PRC2-associated region.

The PRC2-associated region may map to a position in a chromosome between 50 kilobases upstream of a 5′-end of the PTEN gene and 50 kilobases downstream of a 3′-end of the PTEN gene. The PRC2-associated region may map to a position in a chromosome between 25 kilobases upstream of a 5′-end of the PTEN gene and 25 kilobases downstream of a 3′-end of the PTEN gene. The PRC2-associated region may map to a position in a chromosome between 12 kilobases upstream of a 5′-end of the PTEN gene and 12 kilobases downstream of a 3′-end of the PTEN gene. The PRC2-associated region may map to a position in a chromosome between 5 kilobases upstream of a 5′-end of the PTEN gene and 5 kilobases downstream of a 3′-end of the PTEN gene.

The genomic position of the selected PRC2-associated region relative to the PTEN gene may vary. For example, the PRC2-associated region may be upstream of the 5′ end of the PTEN gene. The PRC2-associated region may be downstream of the 3′ end of the PTEN gene. The PRC2-associated region may be within an intron of the PTEN gene. The PRC2-associated region may be within an exon of the PTEN gene. The PRC2-associated region may traverse an intron-exon junction, a 5′-UTR-exon junction or a 3′-UTR-exon junction of the PTEN gene.

The single stranded oligonucleotide may comprise a sequence having the formula X-Y-Z, in which X is any nucleotide, Y is a nucleotide sequence of 6 nucleotides in length that is not a human seed sequence of a microRNA, and Z is a nucleotide sequence of varying length. In some embodiments X is the 5′ nucleotide of the oligonucleotide. In some embodiments, when X is anchored at the 5′ end of the oligonucleotide, the oligonucleotide does not have any nucleotides or nucleotide analogs linked 5′ to X. In some embodiments, other compounds such as peptides or sterols may be linked at the 5′ end in this embodiment as long as they are not nucleotides or nucleotide analogs. In some embodiments, the single stranded oligonucleotide has a sequence 5′X-Y-Z and is 8-50 nucleotides in length. Oligonucleotides that have these sequence characteristics are predicted to avoid the miRNA pathway. Therefore, in some embodiments, oligonucleotides having these sequence characteristics are unlikely to have an unintended consequence of functioning in a cell as a miRNA molecule. The Y sequence may be a nucleotide sequence of 6 nucleotides in length set forth in Table 1.

The single stranded oligonucleotide may have a sequence that does not contain guanosine nucleotide stretches (e.g., 3 or more, 4 or more, 5 or more, 6 or more consecutive guanosine nucleotides). In some embodiments, oligonucleotides having guanosine nucleotide stretches have increased non-specific binding and/or off-target effects, compared with oligonucleotides that do not have guanosine nucleotide stretches.

The single stranded oligonucleotide may have a sequence that has less than a threshold level of sequence identity with every sequence of nucleotides, of equivalent length, that map to a genomic position encompassing or in proximity to an off-target gene. For example, an oligonucleotide may be designed to ensure that it does not have a sequence that maps to genomic positions encompassing or in proximity with all known genes (e.g., all known protein coding genes) other than PTEN. In a similar embodiment, an oligonucleotide may be designed to ensure that it does not have a sequence that maps to any other known PRC2-associated region, particularly PRC2-associated regions that are functionally related to any other known gene (e.g., any other known protein coding gene). In either case, the oligonucleotide is expected to have a reduced likelihood of having off-target effects. The threshold level of sequence identity may be 50%, 60%, 70%, 80%, 85%, 90%, 95%, 99% or 100% sequence identity.

The single stranded oligonucleotide may have a sequence that is complementary to a PRC2-associated region that encodes an RNA that forms a secondary structure comprising at least two single stranded loops. In has been discovered that, in some embodiments, oligonucleotides that are complementary to a PRC2-associated region that encodes an RNA that forms a secondary structure comprising one or more single stranded loops (e.g., at least two single stranded loops) have a greater likelihood of being active (e.g., of being capable of activating or enhancing expression of a target gene) than a randomly selected oligonucleotide. In some cases, the secondary structure may comprise a double stranded stem between the at least two single stranded loops. Accordingly, the region of complementarity between the oligonucleotide and the PRC2-associated region may be at a location of the PRC2 associated region that encodes at least a portion of at least one of the loops. In some cases, the region of complementarity between the oligonucleotide and the PRC2-associated region may be at a location of the PRC2-associated region that encodes at least a portion of at least two of the loops. In some cases, the region of complementarity between the oligonucleotide and the PRC2-associated region may be at a location of the PRC2 associated region that encodes at least a portion of the double stranded stem. In some embodiments, a PRC2-associated region (e.g., of an lncRNA) is identified (e.g., using RIP-Seq methodology or information derived therefrom). In some embodiments, the predicted secondary structure RNA (e.g., lncRNA) containing the PRC2-associated region is determined using RNA secondary structure prediction algorithms, e.g., RNAfold, mfold. In some embodiments, oligonucleotides are designed to target a region of the RNA that forms a secondary structure comprising one or more single stranded loop (e.g., at least two single stranded loops) structures which may comprise a double stranded stem between the at least two single stranded loops.

The single stranded oligonucleotide may have a sequence that is has greater than 30% G-C content, greater than 40% G-C content, greater than 50% G-C content, greater than 60% G-C content, greater than 70% G-C content, or greater than 80% G-C content. The single stranded oligonucleotide may have a sequence that has up to 100% G-C content, up to 95% G-C content, up to 90% G-C content, or up to 80% G-C content. In some embodiments in which the oligonucleotide is 8 to 10 nucleotides in length, all but 1, 2, 3, 4, or 5 of the nucleotides of the complementary sequence of the PRC2-associated region are cytosine or guanosine nucleotides. In some embodiments, the sequence of the PRC2-associated region to which the single stranded oligonucleotide is complementary comprises no more than 3 nucleotides selected from adenine and uracil.

The single stranded oligonucleotide may be complementary to a chromosome of a different species (e.g., a mouse, rat, rabbit, goat, monkey, etc.) at a position that encompasses or that is in proximity to that species' homolog of PTEN. The single stranded oligonucleotide may be complementary to a human genomic region encompassing or in proximity to the PTEN gene and also be complementary to a mouse genomic region encompassing or in proximity to the mouse homolog of PTEN. For example, the single stranded oligonucleotide may be complementary to a sequence as set forth in SEQ ID NO: 1 or 2, which is a human genomic region encompassing or in proximity to the PTEN gene, and also be complementary to a sequence as set forth in SEQ ID NO: 3 or 4, which is a mouse genomic region encompassing or in proximity to the mouse homolog of the PTEN gene. Oligonucleotides having these characteristics may be tested in vivo or in vitro for efficacy in multiple species (e.g., human and mouse). This approach also facilitates development of clinical candidates for treating human disease by selecting a species in which an appropriate animal exists for the disease.

In some embodiments, the region of complementarity of the single stranded oligonucleotide is complementary with at least 8 to 15, 8 to 30, 8 to 40, or 10 to 50, or 5 to 50, or 5 to 40 bases, e.g., 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50 consecutive nucleotides of a PRC2-associated region. In some embodiments, the region of complementarity is complementary with at least 8 consecutive nucleotides of a PRC2-associated region. In some embodiments the sequence of the single stranded oligonucleotide is based on an RNA sequence that binds to PRC2, or a portion thereof, said portion having a length of from 5 to 40 contiguous base pairs, or about 8 to 40 bases, or about 5 to 15, or about 5 to 30, or about 5 to 40 bases, or about 5 to 50 bases.

Complementary, as the term is used in the art, refers to the capacity for precise pairing between two nucleotides. For example, if a nucleotide at a certain position of an oligonucleotide is capable of hydrogen bonding with a nucleotide at the same position of PRC2-associated region, then the single stranded nucleotide and PRC2-associated region are considered to be complementary to each other at that position. The single stranded nucleotide and PRC2-associated region are complementary to each other when a sufficient number of corresponding positions in each molecule are occupied by nucleotides that can hydrogen bond with each other through their bases. Thus, “complementary” is a term which is used to indicate a sufficient degree of complementarity or precise pairing such that stable and specific binding occurs between the single stranded nucleotide and PRC2-associated region. For example, if a base at one position of a single stranded nucleotide is capable of hydrogen bonding with a base at the corresponding position of a PRC2-associated region, then the bases are considered to be complementary to each other at that position. 100% complementarity is not required.

The single stranded oligonucleotide may be at least 80% complementary to (optionally one of at least 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% complementary to) the consecutive nucleotides of a PRC2-associated region. In some embodiments the single stranded oligonucleotide may contain 1, 2 or 3 base mismatches compared to the portion of the consecutive nucleotides of a PRC2-associated region. In some embodiments the single stranded oligonucleotide may have up to 3 mismatches over 15 bases, or up to 2 mismatches over 10 bases.

It is understood in the art that a complementary nucleotide sequence need not be 100% complementary to that of its target to be specifically hybridizable. In some embodiments, a complementary nucleic acid sequence for purposes of the present disclosure is specifically hybridizable when binding of the sequence to the target molecule (e.g., lncRNA) interferes with the normal function of the target (e.g., lncRNA) to cause a loss of activity (e.g., inhibiting PRC2-associated repression with consequent up-regulation of gene expression) and there is a sufficient degree of complementarity to avoid non-specific binding of the sequence to non-target sequences under conditions in which avoidance of non-specific binding is desired, e.g., under physiological conditions in the case of in vivo assays or therapeutic treatment, and in the case of in vitro assays, under conditions in which the assays are performed under suitable conditions of stringency.

In some embodiments, the single stranded oligonucleotide is 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 40, 45, 50 or more nucleotides in length. In a preferred embodiment, the oligonucleotide is 8 to 30 nucleotides in length.

In some embodiments, the PRC2-associated region occurs on the same DNA strand as a gene sequence (sense). In some embodiments, the PRC2-associated region occurs on the opposite DNA strand as a gene sequence (anti-sense). Oligonucleotides complementary to a PRC2-associated region can bind either sense or anti-sense sequences. Base pairings may include both canonical Watson-Crick base pairing and non-Watson-Crick base pairing (e.g., Wobble base pairing and Hoogsteen base pairing). It is understood that for complementary base pairings, adenosine-type bases (A) are complementary to thymidine-type bases (T) or uracil-type bases (U), that cytosine-type bases (C) are complementary to guanosine-type bases (G), and that universal bases such as 3-nitropyrrole or 5-nitroindole can hybridize to and are considered complementary to any A, C, U, or T. Inosine (I) has also been considered in the art to be a universal base and is considered complementary to any A, C, U or T.

In some embodiments, any one or more thymidine (T) nucleotides (or modified nucleotide thereof) or uridine (U) nucleotides (or a modified nucleotide thereof) in a sequence provided herein, including a sequence provided in the sequence listing, may be replaced with any other nucleotide suitable for base pairing (e.g., via a Watson-Crick base pair) with an adenosine nucleotide. In some embodiments, any one or more thymidine (T) nucleotides (or modified nucleotide thereof) or uridine (U) nucleotides (or a modified nucleotide thereof) in a sequence provided herein, including a sequence provided in the sequence listing, may be suitably replaced with a different pyrimidine nucleotide or vice versa. In some embodiments, any one or more thymidine (T) nucleotides (or modified nucleotide thereof) in a sequence provided herein, including a sequence provided in the sequence listing, may be suitably replaced with a uridine (U) nucleotide (or a modified nucleotide thereof) or vice versa.

In some embodiments, GC content of the single stranded oligonucleotide is preferably between about 30-60%. Contiguous runs of three or more Gs or Cs may not be preferable in some embodiments. Accordingly, in some embodiments, the oligonucleotide does not comprise a stretch of three or more guanosine nucleotides.

In some embodiments, the single stranded oligonucleotide specifically binds to, or is complementary to an RNA that is encoded in a genome (e.g., a human genome) as a single contiguous transcript (e.g., a non-spliced RNA). In some embodiments, the single stranded oligonucleotide specifically binds to, or is complementary to an RNA that is encoded in a genome (e.g., a human genome), in which the distance in the genome between the 5′ end of the coding region of the RNA and the 3′ end of the coding region of the RNA is less than 1 kb, less than 2 kb, less than 3 kb, less than 4 kb, less than 5 kb, less than 7 kb, less than 8 kb, less than 9 kb, less than 10 kb, or less than 20 kb.

It is to be understood that any oligonucleotide provided herein can be excluded. For example, in some embodiments, an oligonucleotide does not comprise or consist of a sequence as set for in SEQ ID NOs: 89026 to 89028. In some embodiments, a single stranded oligonucleotide is not complementary to SEQ ID NO: 89029. In some embodiments, a single stranded oligonucleotide is not complementary to SEQ ID NO: 89030.

In some embodiments, it has been found that single stranded oligonucleotides disclosed herein may increase expression of mRNA corresponding to the gene by at least about 50% (i.e. 150% of normal or 1.5 fold), or by about 2 fold to about 5 fold. In some embodiments, expression may be increased by at least about 15 fold, 20 fold, 30 fold, 40 fold, 50 fold or 100 fold, or any range between any of the foregoing numbers. It has also been found that increased mRNA expression has been shown to correlate to increased protein expression.

In some or any of the embodiments of the oligonucleotides described herein, or processes for designing or synthesizing them, the oligonucleotides will upregulate gene expression and may specifically bind or specifically hybridize or be complementary to the PRC2 binding RNA that is transcribed from the same strand as a protein coding reference gene. The oligonucleotide may bind to a region of the PRC2 binding RNA that originates within or overlaps an intron, exon, intron exon junction, 5′ UTR, 3′ UTR, a translation initiation region, or a translation termination region of a protein coding sense strand of a reference gene (refGene).

In some or any of the embodiments of oligonucleotides described herein, or processes for designing or synthesizing them, the oligonucleotides will upregulate gene expression and may specifically bind or specifically hybridize or be complementary to a PRC2 binding RNA that transcribed from the opposite strand (the antisense strand) of a protein coding reference gene. The oligonucleotide may bind to a region of the PRC2 binding RNA that originates within or overlaps an intron, exon, intron exon junction, 5′ UTR, 3′ UTR, a translation initiation region, or a translation termination region of a protein coding antisense strand of a reference gene

The oligonucleotides described herein may be modified, e.g., comprise a modified sugar moiety, a modified internucleoside linkage, a modified nucleotide and/or combinations thereof. In addition, the oligonucleotides can exhibit one or more of the following properties: do not induce substantial cleavage or degradation of the target RNA; do not cause substantially complete cleavage or degradation of the target RNA; do not activate the RNAse H pathway; do not activate RISC; do not recruit any Argonaute family protein; are not cleaved by Dicer; do not mediate alternative splicing; are not immune stimulatory; are nuclease resistant; have improved cell uptake compared to unmodified oligonucleotides; are not toxic to cells or mammals; may have improved endosomal exit; do interfere with interaction of lncRNA with PRC2, preferably the Ezh2 subunit but optionally the Suz12, Eed, RbAp46/48 subunits or accessory factors such as Jarid2; do decrease histone H3 lysine27 methylation and/or do upregulate gene expression.

Oligonucleotides that are designed to interact with RNA to modulate gene expression are a distinct subset of base sequences from those that are designed to bind a DNA target (e.g., are complementary to the underlying genomic DNA sequence from which the RNA is transcribed).

Any of the oligonucleotides disclosed herein may be linked to one or more other oligonucleotides disclosed herein by a linker, e.g., a cleavable linker.

Method for Selecting Candidate Oligonucleotides for Activating Expression of PTEN

Methods are provided herein for selecting a candidate oligonucleotide for activating or enhancing expression of PTEN. The target selection methods may generally involve steps for selecting single stranded oligonucleotides having any of the structural and functional characteristics disclosed herein. Typically, the methods involve one or more steps aimed at identifying oligonucleotides that target a PRC2-associated region that is functionally related to PTEN, for example a PRC2-associated region of a lncRNA that regulates expression of PTEN by facilitating (e.g., in a cis-regulatory manner) the recruitment of PRC2 to the PTEN gene. Such oligonucleotides are expected to be candidates for activating expression of PTEN because of their ability to hybridize with the PRC2-associated region of a nucleic acid (e.g., a lncRNA). In some embodiments, this hybridization event is understood to disrupt interaction of PRC2 with the nucleic acid (e.g., a lncRNA) and as a result disrupt recruitment of PRC2 and its associated co-repressors (e.g., chromatin remodeling factors) to the PTEN gene locus.

Methods of selecting a candidate oligonucleotide may involve selecting a PRC2-associated region (e.g., a nucleotide sequence as set forth in any one of SEQ ID NOS: 5 to 148) that maps to a chromosomal position encompassing or in proximity to the PTEN gene (e.g., a chromosomal position having a sequence as set forth in any one of SEQ ID NOS: 1 to 4). The PRC2-associated region may map to the strand of the chromosome comprising the sense strand of the PTEN gene, in which case the candidate oligonucleotide is complementary to the sense strand of the PTEN gene (i.e., is antisense to the PTEN gene). Alternatively, the PRC2-associated region may map to the strand of the first chromosome comprising the antisense strand of the PTEN gene, in which case the oligonucleotide is complementary to the antisense strand (the template strand) of the PTEN gene (i.e., is sense to the PTEN gene).

Methods for selecting a set of candidate oligonucleotides that is enriched in oligonucleotides that activate expression of PTEN may involve selecting one or more PRC2-associated regions that map to a chromosomal position that encompasses or that is in proximity to the PTEN gene and selecting a set of oligonucleotides, in which each oligonucleotide in the set comprises a nucleotide sequence that is complementary with the one or more PRC2-associated regions. As used herein, the phrase, “a set of oligonucleotides that is enriched in oligonucleotides that activate expression of” refers to a set of oligonucleotides that has a greater number of oligonucleotides that activate expression of a target gene (e.g., PTEN) compared with a random selection of oligonucleotides of the same physicochemical properties (e.g., the same GC content, T_(m), length etc.) as the enriched set.

Where the design and/or synthesis of a single stranded oligonucleotide involves design and/or synthesis of a sequence that is complementary to a nucleic acid or PRC2-associated region described by such sequence information, the skilled person is readily able to determine the complementary sequence, e.g., through understanding of Watson Crick base pairing rules which form part of the common general knowledge in the field.

In some embodiments design and/or synthesis of a single stranded oligonucleotide involves manufacture of an oligonucleotide from starting materials by techniques known to those of skill in the art, where the synthesis may be based on a sequence of a PRC2-associated region, or portion thereof.

Methods of design and/or synthesis of a single stranded oligonucleotide may involve one or more of the steps of:

Identifying and/or selecting PRC2-associated region;

Designing a nucleic acid sequence having a desired degree of sequence identity or complementarity to a PRC2-associated region or a portion thereof;

Synthesizing a single stranded oligonucleotide to the designed sequence;

Purifying the synthesized single stranded oligonucleotide; and

Optionally mixing the synthesized single stranded oligonucleotide with at least one pharmaceutically acceptable diluent, carrier or excipient to form a pharmaceutical composition or medicament.

Single stranded oligonucleotides so designed and/or synthesized may be useful in method of modulating gene expression as described herein.

Preferably, single stranded oligonucleotides of the invention are synthesized chemically. Oligonucleotides used to practice this invention can be synthesized in vitro by well-known chemical synthesis techniques.

Oligonucleotides of the invention can be stabilized against nucleolytic degradation such as by the incorporation of a modification, e.g., a nucleotide modification. For example, nucleic acid sequences of the invention include a phosphorothioate at least the first, second, or third internucleotide linkage at the 5′ or 3′ end of the nucleotide sequence. As another example, the nucleic acid sequence can include a 2′-modified nucleotide, e.g., a 2′-deoxy, 2′-deoxy-2′-fluoro, 2′-O-methyl, 2′-O-methoxyethyl (2′-O-MOE), 2′-O-aminopropyl (2′-O-AP), 2′-O-dimethylaminoethyl (2′-O-DMAOE), 2′-O-dimethylaminopropyl (2′-O-DMAP), 2′-O-dimethylaminoethyloxyethyl (2′-O-DMAEOE), or 2′-O—N-methylacetamido (2′-O-NMA). As another example, the nucleic acid sequence can include at least one 2′-O-methyl-modified nucleotide, and in some embodiments, all of the nucleotides include a 2′-O-methyl modification. In some embodiments, the nucleic acids are “locked,” i.e., comprise nucleic acid analogues in which the ribose ring is “locked” by a methylene bridge connecting the 2′-O atom and the 4′-C atom.

It is understood that any of the modified chemistries or formats of single stranded oligonucleotides described herein can be combined with each other, and that one, two, three, four, five, or more different types of modifications can be included within the same molecule.

In some embodiments, the method may further comprise the steps of amplifying the synthesized single stranded oligonucleotide, and/or purifying the single stranded oligonucleotide (or amplified single stranded oligonucleotide), and/or sequencing the single stranded oligonucleotide so obtained.

As such, the process of preparing a single stranded oligonucleotide may be a process that is for use in the manufacture of a pharmaceutical composition or medicament for use in the treatment of disease, optionally wherein the treatment involves modulating expression of a gene associated with a PRC2-associated region.

In the methods described above a PRC2-associated region may be, or have been, identified, or obtained, by a method that involves identifying RNA that binds to PRC2.

Such methods may involve the following steps: providing a sample containing nuclear ribonucleic acids, contacting the sample with an agent that binds specifically to PRC2 or a subunit thereof, allowing complexes to form between the agent and protein in the sample, partitioning the complexes, synthesizing nucleic acid that is complementary to nucleic acid present in the complexes.

Where the single stranded oligonucleotide is based on a PRC2-associated region, or a portion of such a sequence, it may be based on information about that sequence, e.g., sequence information available in written or electronic form, which may include sequence information contained in publicly available scientific publications or sequence databases.

Nucleotide Analogues

In some embodiments, the oligonucleotide may comprise at least one ribonucleotide, at least one deoxyribonucleotide, and/or at least one bridged nucleotide. In some embodiments, the oligonucleotide may comprise a bridged nucleotide, such as a locked nucleic acid (LNA) nucleotide, a constrained ethyl (cEt) nucleotide, or an ethylene bridged nucleic acid (ENA) nucleotide. Examples of such nucleotides are disclosed herein and known in the art. In some embodiments, the oligonucleotide comprises a nucleotide analog disclosed in one of the following United States patent or patent application Publications: U.S. Pat. No. 7,399,845, U.S. Pat. No. 7,741,457, U.S. Pat. No. 8,022,193, U.S. Pat. No. 7,569,686, U.S. Pat. No. 7,335,765, U.S. Pat. No. 7,314,923, U.S. Pat. No. 7,335,765, and U.S. Pat. No. 7,816,333, US 20110009471, the entire contents of each of which are incorporated herein by reference for all purposes. The oligonucleotide may have one or more 2′ O-methyl nucleotides. The oligonucleotide may consist entirely of 2′ O-methyl nucleotides.

Often the single stranded oligonucleotide has one or more nucleotide analogues. For example, the single stranded oligonucleotide may have at least one nucleotide analogue that results in an increase in T_(m) of the oligonucleotide in a range of 1° C., 2° C., 3° C., 4° C., or 5° C. compared with an oligonucleotide that does not have the at least one nucleotide analogue. The single stranded oligonucleotide may have a plurality of nucleotide analogues that results in a total increase in T_(m) of the oligonucleotide in a range of 2° C., 3° C., 4° C., 5° C., 6° C., 7° C., 8° C., 9° C., 10° C., 15° C., 20° C., 25° C., 30° C., 35° C., 40° C., 45° C. or more compared with an oligonucleotide that does not have the nucleotide analogue.

The oligonucleotide may be of up to 50 nucleotides in length in which 2 to 10, 2 to 15, 2 to 16, 2 to 17, 2 to 18, 2 to 19, 2 to 20, 2 to 25, 2 to 30, 2 to 40, 2 to 45, or more nucleotides of the oligonucleotide are nucleotide analogues. The oligonucleotide may be of 8 to 30 nucleotides in length in which 2 to 10, 2 to 15, 2 to 16, 2 to 17, 2 to 18, 2 to 19, 2 to 20, 2 to 25, 2 to 30 nucleotides of the oligonucleotide are nucleotide analogues. The oligonucleotide may be of 8 to 15 nucleotides in length in which 2 to 4, 2 to 5, 2 to 6, 2 to 7, 2 to 8, 2 to 9, 2 to 10, 2 to 11, 2 to 12, 2 to 13, 2 to 14 nucleotides of the oligonucleotide are nucleotide analogues. Optionally, the oligonucleotides may have every nucleotide except 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides modified.

The oligonucleotide may consist entirely of bridged nucleotides (e.g., LNA nucleotides, cEt nucleotides, ENA nucleotides). The oligonucleotide may comprise alternating deoxyribonucleotides and 2′-fluoro-deoxyribonucleotides. The oligonucleotide may comprise alternating deoxyribonucleotides and 2′-O-methyl nucleotides. The oligonucleotide may comprise alternating deoxyribonucleotides and ENA nucleotide analogues. The oligonucleotide may comprise alternating deoxyribonucleotides and LNA nucleotides. The oligonucleotide may comprise alternating LNA nucleotides and 2′-O-methyl nucleotides. The oligonucleotide may have a 5′ nucleotide that is a bridged nucleotide (e.g., a LNA nucleotide, cEt nucleotide, ENA nucleotide). The oligonucleotide may have a 5′ nucleotide that is a deoxyribonucleotide.

The oligonucleotide may comprise deoxyribonucleotides flanked by at least one bridged nucleotide (e.g., a LNA nucleotide, cEt nucleotide, ENA nucleotide) on each of the 5′ and 3′ ends of the deoxyribonucleotides. The oligonucleotide may comprise deoxyribonucleotides flanked by 1, 2, 3, 4, 5, 6, 7, 8 or more bridged nucleotides (e.g., LNA nucleotides, cEt nucleotides, ENA nucleotides) on each of the 5′ and 3′ ends of the deoxyribonucleotides. The 3′ position of the oligonucleotide may have a 3′ hydroxyl group. The 3′ position of the oligonucleotide may have a 3′ thiophosphate.

The oligonucleotide may be conjugated with a label. For example, the oligonucleotide may be conjugated with a biotin moiety, cholesterol, Vitamin A, folate, sigma receptor ligands, aptamers, peptides, such as CPP, hydrophobic molecules, such as lipids, ASGPR or dynamic polyconjugates and variants thereof at its 5′ or 3′ end.

Preferably the single stranded oligonucleotide comprises one or more modifications comprising: a modified sugar moiety, and/or a modified internucleoside linkage, and/or a modified nucleotide and/or combinations thereof. It is not necessary for all positions in a given oligonucleotide to be uniformly modified, and in fact more than one of the modifications described herein may be incorporated in a single oligonucleotide or even at within a single nucleoside within an oligonucleotide.

In some embodiments, the single stranded oligonucleotides are chimeric oligonucleotides that contain two or more chemically distinct regions, each made up of at least one nucleotide. These oligonucleotides typically contain at least one region of modified nucleotides that confers one or more beneficial properties (such as, for example, increased nuclease resistance, increased uptake into cells, increased binding affinity for the target) and a region that is a substrate for enzymes capable of cleaving RNA:DNA or RNA:RNA hybrids. Chimeric single stranded oligonucleotides of the invention may be formed as composite structures of two or more oligonucleotides, modified oligonucleotides, oligonucleosides and/or oligonucleotide mimetics as described above. Such compounds have also been referred to in the art as hybrids or gapmers. Representative United States patents that teach the preparation of such hybrid structures comprise, but are not limited to, U.S. Pat. Nos. 5,013,830; 5,149,797; 5,220,007; 5,256,775; 5,366,878; 5,403,711; 5,491,133; 5,565,350; 5,623,065; 5,652,355; 5,652,356; and 5,700,922, each of which is herein incorporated by reference.

In some embodiments, the single stranded oligonucleotide comprises at least one nucleotide modified at the 2′ position of the sugar, most preferably a 2′-O-alkyl, 2′-O-alkyl-O-alkyl or 2′-fluoro-modified nucleotide. In other preferred embodiments, RNA modifications include 2′-fluoro, 2′-amino and 2′ O-methyl modifications on the ribose of pyrimidines, abasic residues or an inverted base at the 3′ end of the RNA. Such modifications are routinely incorporated into oligonucleotides and these oligonucleotides have been shown to have a higher Tm (i.e., higher target binding affinity) than 2′-deoxyoligonucleotides against a given target.

A number of nucleotide and nucleoside modifications have been shown to make the oligonucleotide into which they are incorporated more resistant to nuclease digestion than the native oligodeoxynucleotide; these modified oligos survive intact for a longer time than unmodified oligonucleotides. Specific examples of modified oligonucleotides include those comprising modified backbones, for example, phosphorothioates, phosphotriesters, methyl phosphonates, short chain alkyl or cycloalkyl intersugar linkages or short chain heteroatomic or heterocyclic intersugar linkages. Most preferred are oligonucleotides with phosphorothioate backbones and those with heteroatom backbones, particularly CH₂—NH—O—CH₂, CH, ˜N(CH₃)˜O˜CH₂ (known as a methylene(methylimino) or MMI backbone, CH₂—O—N(CH₃)—CH₂, CH₂—N(CH₃)—N(CH₃)—CH₂ and O—N(CH₃)— CH₂—CH₂ backbones, wherein the native phosphodiester backbone is represented as O—P—O—CH); amide backbones (see De Mesmaeker et al. Ace. Chem. Res. 1995, 28:366-374); morpholino backbone structures (see Summerton and Weller, U.S. Pat. No. 5,034,506); peptide nucleic acid (PNA) backbone (wherein the phosphodiester backbone of the oligonucleotide is replaced with a polyamide backbone, the nucleotides being bound directly or indirectly to the aza nitrogen atoms of the polyamide backbone, see Nielsen et al., Science 1991, 254, 1497). Phosphorus-containing linkages include, but are not limited to, phosphorothioates, chiral phosphorothioates, phosphorodithioates, phosphotriesters, aminoalkylphosphotriesters, methyl and other alkyl phosphonates comprising 3′alkylene phosphonates and chiral phosphonates, phosphinates, phosphoramidates comprising 3′-amino phosphoramidate and aminoalkylphosphoramidates, thionophosphoramidates, thionoalkylphosphonates, thionoalkylphosphotriesters, and boranophosphates having normal 3′-5′ linkages, 2′-5′ linked analogs of these, and those having inverted polarity wherein the adjacent pairs of nucleoside units are linked 3′-5′ to 5′-3′ or 2′-5′ to 5′-2′; see U.S. Pat. Nos. 3,687,808; 4,469,863; 4,476,301; 5,023,243; 5,177,196; 5,188,897; 5,264,423; 5,276,019; 5,278,302; 5,286,717; 5,321,131; 5,399,676; 5,405,939; 5,453,496; 5,455, 233; 5,466,677; 5,476,925; 5,519,126; 5,536,821; 5,541,306; 5,550,111; 5,563, 253; 5,571,799; 5,587,361; and 5,625,050.

Morpholino-based oligomeric compounds are described in Dwaine A. Braasch and David R. Corey, Biochemistry, 2002, 41(14), 4503-4510); Genesis, volume 30, issue 3, 2001; Heasman, J., Dev. Biol., 2002, 243, 209-214; Nasevicius et al., Nat. Genet., 2000, 26, 216-220; Lacerra et al., Proc. Natl. Acad. Sci., 2000, 97, 9591-9596; and U.S. Pat. No. 5,034,506, issued Jul. 23, 1991. In some embodiments, the morpholino-based oligomeric compound is a phosphorodiamidate morpholino oligomer (PMO) (e.g., as described in Iverson, Curr. Opin. Mol. Ther., 3:235-238, 2001; and Wang et al., J. Gene Med., 12:354-364, 2010; the disclosures of which are incorporated herein by reference in their entireties).

Cyclohexenyl nucleic acid oligonucleotide mimetics are described in Wang et al., J. Am. Chem. Soc., 2000, 122, 8595-8602.

Modified oligonucleotide backbones that do not include a phosphorus atom therein have backbones that are formed by short chain alkyl or cycloalkyl internucleoside linkages, mixed heteroatom and alkyl or cycloalkyl internucleoside linkages, or one or more short chain heteroatomic or heterocyclic internucleoside linkages. These comprise those having morpholino linkages (formed in part from the sugar portion of a nucleoside); siloxane backbones; sulfide, sulfoxide and sulfone backbones; formacetyl and thioformacetyl backbones; methylene formacetyl and thioformacetyl backbones; alkene containing backbones; sulfamate backbones; methyleneimino and methylenehydrazino backbones; sulfonate and sulfonamide backbones; amide backbones; and others having mixed N, O, S and CH2 component parts; see U.S. Pat. Nos. 5,034,506; 5,166,315; 5,185,444; 5,214,134; 5,216,141; 5,235,033; 5,264,562; 5,264,564; 5,405,938; 5,434,257; 5,466,677; 5,470,967; 5,489,677; 5,541,307; 5,561,225; 5,596,086; 5,602,240; 5,610,289; 5,602,240; 5,608,046; 5,610,289; 5,618,704; 5,623,070; 5,663,312; 5,633,360; 5,677,437; and 5,677,439, each of which is herein incorporated by reference.

Modified oligonucleotides are also known that include oligonucleotides that are based on or constructed from arabinonucleotide or modified arabinonucleotide residues. Arabinonucleosides are stereoisomers of ribonucleosides, differing only in the configuration at the 2′-position of the sugar ring. In some embodiments, a 2′-arabino modification is 2′-F arabino. In some embodiments, the modified oligonucleotide is 2′-fluoro-D-arabinonucleic acid (FANA) (as described in, for example, Lon et al., Biochem., 41:3457-3467, 2002 and Min et al., Bioorg. Med. Chem. Lett., 12:2651-2654, 2002; the disclosures of which are incorporated herein by reference in their entireties). Similar modifications can also be made at other positions on the sugar, particularly the 3′ position of the sugar on a 3′ terminal nucleoside or in 2′-5′ linked oligonucleotides and the 5′ position of 5′ terminal nucleotide.

PCT Publication No. WO 99/67378 discloses arabinonucleic acids (ANA) oligomers and their analogues for improved sequence specific inhibition of gene expression via association to complementary messenger RNA.

Other preferred modifications include ethylene-bridged nucleic acids (ENAs) (e.g., International Patent Publication No. WO 2005/042777, Morita et al., Nucleic Acid Res., Suppl 1:241-242, 2001; Surono et al., Hum. Gene Ther., 15:749-757, 2004; Koizumi, Curr. Opin. Mol. Ther., 8:144-149, 2006 and Horie et al., Nucleic Acids Symp. Ser (Oxf), 49:171-172, 2005; the disclosures of which are incorporated herein by reference in their entireties). Preferred ENAs include, but are not limited to, 2′-O,4′-C-ethylene-bridged nucleic acids.

Examples of LNAs are described in WO/2008/043753 and include compounds of the following general formula.

where X and Y are independently selected among the groups —O—,

—S—, —N(H)—, N(R)—, —CH₂— or —CH— (if part of a double bond),

—CH₂—O—, —CH₂—S—, —CH₂—N(H)—, —CH₂—N(R)—, —CH₂—CH₂— or —CH₂—CH— (if part of a double bond),

—CH═CH—, where R is selected from hydrogen and C₁₋₄-alkyl; Z and Z* are independently selected among an internucleoside linkage, a terminal group or a protecting group; B constitutes a natural or non-natural nucleotide base moiety; and the asymmetric groups may be found in either orientation.

Preferably, the LNA used in the oligonucleotides described herein comprises at least one LNA unit according any of the formulas

wherein Y is —O—, —S—, —NH—, or N(R^(H)); Z and Z* are independently selected among an internucleoside linkage, a terminal group or a protecting group; B constitutes a natural or non-natural nucleotide base moiety, and RH is selected from hydrogen and C₁₋₄-alkyl.

In some embodiments, the Locked Nucleic Acid (LNA) used in the oligonucleotides described herein comprises at least one Locked Nucleic Acid (LNA) unit according any of the formulas shown in Scheme 2 of PCT/DK2006/000512.

In some embodiments, the LNA used in the oligomer of the invention comprises internucleoside linkages selected from —O—P(O)₂—O—, —O—P(O,S)—O—, —O—P(S)₂—O—, —S—P(O)₂—O—, —S—P(O,S)—O—, —S—P(S)₂—O—, —O—P(O)₂—S—, —O—P(O,S)—S—, —S—P(O)₂—S—, —O—PO(R^(H))—O—, O—PO(OCH₃)—O—, —O—PO(NR^(H))—O—, —O—PO(OCH₂CH₂S—R)—O—, —O—PO(BH₃)—O—, —O—PO(NHR^(H))—O—, —O—P(O)₂—NR^(H)—, —NR^(H)—P(O)₂—O—, —NR^(H)—CO—O—, where R^(H) is selected from hydrogen and C₁₋₄-alkyl.

Specifically preferred LNA units are shown in scheme 2:

The term “thio-LNA” comprises a locked nucleotide in which at least one of X or Y in the general formula above is selected from S or —CH₂—S—. Thio-LNA can be in both beta-D and alpha-L-configuration.

The term “amino-LNA” comprises a locked nucleotide in which at least one of X or Y in the general formula above is selected from —N(H)—, N(R)—, CH₂—N(H)—, and —CH₂—N(R)— where R is selected from hydrogen and C₁₋₄-alkyl. Amino-LNA can be in both beta-D and alpha-L-configuration.

The term “oxy-LNA” comprises a locked nucleotide in which at least one of X or Y in the general formula above represents —O— or —CH₂—O—. Oxy-LNA can be in both beta-D and alpha-L-configuration.

The term “ena-LNA” comprises a locked nucleotide in which Y in the general formula above is —CH₂—O— (where the oxygen atom of —CH₂—O— is attached to the 2′-position relative to the base B).

LNAs are described in additional detail herein.

One or more substituted sugar moieties can also be included, e.g., one of the following at the 2′ position: OH, SH, SCH₃, F, OCN, OCH₃OCH₃, OCH₃O(CH₂)n CH₃, O(CH₂)n NH₂ or O(CH₂)n CH₃ where n is from 1 to about 10; C1 to C10 lower alkyl, alkoxyalkoxy, substituted lower alkyl, alkaryl or aralkyl; Cl; Br; CN; CF₃; OCF₃; O-, S-, or N-alkyl; O-, S-, or N-alkenyl; SOCH₃; SO₂CH₃; ONO₂; NO₂; N₃; NH2; heterocycloalkyl; heterocycloalkaryl; amino alkylamino; polyalkylamino; substituted silyl; an RNA cleaving group; a reporter group; an intercalator; a group for improving the pharmacokinetic properties of an oligonucleotide; or a group for improving the pharmacodynamic properties of an oligonucleotide and other substituents having similar properties. A preferred modification includes 2′-methoxyethoxy[2′-O—CH₂CH₂OCH₃, also known as 2′-O-(2-methoxyethyl)] (Martin et al, HeIv. Chim. Acta, 1995, 78, 486). Other preferred modifications include 2′-methoxy (2′-O—CH₃), 2′-propoxy (2′-OCH₂CH₂CH₃) and 2′-fluoro (2′-F). Similar modifications may also be made at other positions on the oligonucleotide, particularly the 3′ position of the sugar on the 3′ terminal nucleotide and the 5′ position of 5′ terminal nucleotide. Oligonucleotides may also have sugar mimetics such as cyclobutyls in place of the pentofuranosyl group.

Single stranded oligonucleotides can also include, additionally or alternatively, nucleobase (often referred to in the art simply as “base”) modifications or substitutions. As used herein, “unmodified” or “natural” nucleobases include adenine (A), guanine (G), thymine (T), cytosine (C) and uracil (U). Modified nucleobases include nucleobases found only infrequently or transiently in natural nucleic acids, e.g., hypoxanthine, 6-methyladenine, 5-Me pyrimidines, particularly 5-methylcytosine (also referred to as 5-methyl-2′ deoxycytosine and often referred to in the art as 5-Me-C), 5-hydroxymethylcytosine (HMC), glycosyl HMC and gentobiosyl HMC, isocytosine, pseudoisocytosine, as well as synthetic nucleobases, e.g., 2-aminoadenine, 2-(methylamino)adenine, 2-(imidazolylalkyl)adenine, 2-(aminoalklyamino)adenine or other heterosubstituted alkyladenines, 2-thiouracil, 2-thiothymine, 5-bromouracil, 5-hydroxymethyluracil, 5-propynyluracil, 8-azaguanine, 7-deazaguanine, N6 (6-aminohexyl)adenine, 6-aminopurine, 2-aminopurine, 2-chloro-6-aminopurine and 2,6-diaminopurine or other diaminopurines. See, e.g., Kornberg, “DNA Replication,” W. H. Freeman & Co., San Francisco, 1980, pp 75-77; and Gebeyehu, G., et al. Nucl. Acids Res., 15:4513 (1987)). A “universal” base known in the art, e.g., inosine, can also be included. 5-Me-C substitutions have been shown to increase nucleic acid duplex stability by 0.6-1.2° C. (Sanghvi, in Crooke, and Lebleu, eds., Antisense Research and Applications, CRC Press, Boca Raton, 1993, pp. 276-278) and may be used as base substitutions.

It is not necessary for all positions in a given oligonucleotide to be uniformly modified, and in fact more than one of the modifications described herein may be incorporated in a single oligonucleotide or even at within a single nucleoside within an oligonucleotide.

In some embodiments, both a sugar and an internucleoside linkage, i.e., the backbone, of the nucleotide units are replaced with novel groups. The base units are maintained for hybridization with an appropriate nucleic acid target compound. One such oligomeric compound, an oligonucleotide mimetic that has been shown to have excellent hybridization properties, is referred to as a peptide nucleic acid (PNA). In PNA compounds, the sugar-backbone of an oligonucleotide is replaced with an amide containing backbone, for example, an aminoethylglycine backbone. The nucleobases are retained and are bound directly or indirectly to aza nitrogen atoms of the amide portion of the backbone. Representative United States patents that teach the preparation of PNA compounds include, but are not limited to, U.S. Pat. Nos. 5,539,082; 5,714,331; and 5,719,262, each of which is herein incorporated by reference. Further teaching of PNA compounds can be found in Nielsen et al, Science, 1991, 254, 1497-1500.

Single stranded oligonucleotides can also include one or more nucleobase (often referred to in the art simply as “base”) modifications or substitutions. As used herein, “unmodified” or “natural” nucleobases comprise the purine bases adenine (A) and guanine (G), and the pyrimidine bases thymine (T), cytosine (C) and uracil (U). Modified nucleobases comprise other synthetic and natural nucleobases such as 5-methylcytosine (5-me-C), 5-hydroxymethyl cytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 2-thiouracil, 2-thiothymine and 2-thiocytosine, 5-halouracil and cytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudo-uracil), 4-thiouracil, 8-halo, 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxyl and other 8-substituted adenines and guanines, 5-halo particularly 5-bromo, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylquanine and 7-methyladenine, 8-azaguanine and 8-azaadenine, 7-deazaguanine and 7-deazaadenine and 3-deazaguanine and 3-deazaadenine.

Further, nucleobases comprise those disclosed in U.S. Pat. No. 3,687,808, those disclosed in “The Concise Encyclopedia of Polymer Science And Engineering”, pages 858-859, Kroschwitz, ed. John Wiley & Sons, 1990; those disclosed by Englisch et al., Angewandle Chemie, International Edition, 1991, 30, page 613, and those disclosed by Sanghvi, Chapter 15, Antisense Research and Applications,” pages 289-302, Crooke, and Lebleu, eds., CRC Press, 1993. Certain of these nucleobases are particularly useful for increasing the binding affinity of the oligomeric compounds of the invention. These include 5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and 0-6 substituted purines, comprising 2-aminopropyladenine, 5-propynyluracil and 5-propynylcytosine. 5-methylcytosine substitutions have been shown to increase nucleic acid duplex stability by 0.6-1.2<0>C (Sanghvi, et al., eds, “Antisense Research and Applications,” CRC Press, Boca Raton, 1993, pp. 276-278) and are presently preferred base substitutions, even more particularly when combined with 2′-O-methoxyethyl sugar modifications. Modified nucleobases are described in U.S. Pat. No. 3,687,808, as well as U.S. Pat. Nos. 4,845,205; 5,130,302; 5,134,066; 5,175,273; 5,367,066; 5,432,272; 5,457,187; 5,459,255; 5,484,908; 5,502,177; 5,525,711; 5,552,540; 5,587,469; 5,596,091; 5,614,617; 5,750,692, and 5,681,941, each of which is herein incorporated by reference.

In some embodiments, the single stranded oligonucleotides are chemically linked to one or more moieties or conjugates that enhance the activity, cellular distribution, or cellular uptake of the oligonucleotide. For example, one or more single stranded oligonucleotides, of the same or different types, can be conjugated to each other; or single stranded oligonucleotides can be conjugated to targeting moieties with enhanced specificity for a cell type or tissue type. Such moieties include, but are not limited to, lipid moieties such as a cholesterol moiety (Letsinger et al., Proc. Natl. Acad. Sci. USA, 1989, 86, 6553-6556), cholic acid (Manoharan et al., Bioorg. Med. Chem. Let., 1994, 4, 1053-1060), a thioether, e.g., hexyl-S-tritylthiol (Manoharan et al, Ann. N. Y. Acad. Sci., 1992, 660, 306-309; Manoharan et al., Bioorg. Med. Chem. Let., 1993, 3, 2765-2770), a thiocholesterol (Oberhauser et al., Nucl. Acids Res., 1992, 20, 533-538), an aliphatic chain, e.g., dodecandiol or undecyl residues (Kabanov et al., FEBS Lett., 1990, 259, 327-330; Svinarchuk et al., Biochimie, 1993, 75, 49-54), a phospholipid, e.g., di-hexadecyl-rac-glycerol or triethylammonium 1,2-di-O-hexadecyl-rac-glycero-3-H-phosphonate (Manoharan et al., Tetrahedron Lett., 1995, 36, 3651-3654; Shea et al., Nucl. Acids Res., 1990, 18, 3777-3783), a polyamine or a polyethylene glycol chain (Mancharan et al., Nucleosides & Nucleotides, 1995, 14, 969-973), or adamantane acetic acid (Manoharan et al., Tetrahedron Lett., 1995, 36, 3651-3654), a palmityl moiety (Mishra et al., Biochim. Biophys. Acta, 1995, 1264, 229-237), or an octadecylamine or hexylamino-carbonyl-t oxycholesterol moiety (Crooke et al., J. Pharmacol. Exp. Ther., 1996, 277, 923-937). See also U.S. Pat. Nos. 4,828,979; 4,948,882; 5,218,105; 5,525,465; 5,541,313; 5,545,730; 5,552,538; 5,578,717, 5,580,731; 5,580,731; 5,591,584; 5,109,124; 5,118,802; 5,138,045; 5,414,077; 5,486,603; 5,512,439; 5,578,718; 5,608,046; 4,587,044; 4,605,735; 4,667,025; 4,762,779; 4,789,737; 4,824,941; 4,835,263; 4,876,335; 4,904,582; 4,958,013; 5,082,830; 5,112,963; 5,214,136; 5,082,830; 5,112,963; 5,214,136; 5,245,022; 5,254,469; 5,258,506; 5,262,536; 5,272,250; 5,292,873; 5,317,098; 5,371,241, 5,391,723; 5,416,203, 5,451,463; 5,510,475; 5,512,667; 5,514,785; 5,565,552; 5,567,810; 5,574,142; 5,585,481; 5,587,371; 5,595,726; 5,597,696; 5,599,923; 5,599,928 and 5,688,941, each of which is herein incorporated by reference.

These moieties or conjugates can include conjugate groups covalently bound to functional groups such as primary or secondary hydroxyl groups. Conjugate groups of the invention include intercalators, reporter molecules, polyamines, polyamides, polyethylene glycols, polyethers, groups that enhance the pharmacodynamic properties of oligomers, and groups that enhance the pharmacokinetic properties of oligomers. Typical conjugate groups include cholesterols, lipids, phospholipids, biotin, phenazine, folate, phenanthridine, anthraquinone, acridine, fluoresceins, rhodamines, coumarins, and dyes. Groups that enhance the pharmacodynamic properties, in the context of this invention, include groups that improve uptake, enhance resistance to degradation, and/or strengthen sequence-specific hybridization with the target nucleic acid. Groups that enhance the pharmacokinetic properties, in the context of this invention, include groups that improve uptake, distribution, metabolism or excretion of the compounds of the present invention. Representative conjugate groups are disclosed in International Patent Application No. PCT/US92/09196, filed Oct. 23, 1992, and U.S. Pat. No. 6,287,860, which are incorporated herein by reference. Conjugate moieties include, but are not limited to, lipid moieties such as a cholesterol moiety, cholic acid, a thioether, e.g., hexyl-5-tritylthiol, a thiocholesterol, an aliphatic chain, e.g., dodecandiol or undecyl residues, a phospholipid, e.g., di-hexadecyl-rac-glycerol or triethylammonium 1,2-di-O-hexadecyl-rac-glycero-3-H-phosphonate, a polyamine or a polyethylene glycol chain, or adamantane acetic acid, a palmityl moiety, or an octadecylamine or hexylamino-carbonyl-oxy cholesterol moiety. See, e.g., U.S. Pat. Nos. 4,828,979; 4,948,882; 5,218,105; 5,525,465; 5,541,313; 5,545,730; 5,552,538; 5,578,717, 5,580,731; 5,580,731; 5,591,584; 5,109,124; 5,118,802; 5,138,045; 5,414,077; 5,486,603; 5,512,439; 5,578,718; 5,608,046; 4,587,044; 4,605,735; 4,667,025; 4,762,779; 4,789,737; 4,824,941; 4,835,263; 4,876,335; 4,904,582; 4,958,013; 5,082,830; 5,112,963; 5,214,136; 5,082,830; 5,112,963; 5,214,136; 5,245,022; 5,254,469; 5,258,506; 5,262,536; 5,272,250; 5,292,873; 5,317,098; 5,371,241, 5,391,723; 5,416,203, 5,451,463; 5,510,475; 5,512,667; 5,514,785; 5,565,552; 5,567,810; 5,574,142; 5,585,481; 5,587,371; 5,595,726; 5,597,696; 5,599,923; 5,599,928 and 5,688,941.

In some embodiments, single stranded oligonucleotide modification include modification of the 5′ or 3′ end of the oligonucleotide. In some embodiments, the 3′ end of the oligonucleotide comprises a hydroxyl group or a thiophosphate. It should be appreciated that additional molecules (e.g. a biotin moiety or a fluorophor) can be conjugated to the 5′ or 3′ end of the single stranded oligonucleotide. In some embodiments, the single stranded oligonucleotide comprises a biotin moiety conjugated to the 5′ nucleotide.

In some embodiments, the single stranded oligonucleotide comprises locked nucleic acids (LNA), ENA modified nucleotides, 2′-O-methyl nucleotides, or 2′-fluoro-deoxyribonucleotides. In some embodiments, the single stranded oligonucleotide comprises alternating deoxyribonucleotides and 2′-fluoro-deoxyribonucleotides. In some embodiments, the single stranded oligonucleotide comprises alternating deoxyribonucleotides and 2′-O-methyl nucleotides. In some embodiments, the single stranded oligonucleotide comprises alternating deoxyribonucleotides and ENA modified nucleotides. In some embodiments, the single stranded oligonucleotide comprises alternating deoxyribonucleotides and locked nucleic acid nucleotides. In some embodiments, the single stranded oligonucleotide comprises alternating locked nucleic acid nucleotides and 2′-O-methyl nucleotides.

In some embodiments, the 5′ nucleotide of the oligonucleotide is a deoxyribonucleotide. In some embodiments, the 5′ nucleotide of the oligonucleotide is a locked nucleic acid nucleotide. In some embodiments, the nucleotides of the oligonucleotide comprise deoxyribonucleotides flanked by at least one locked nucleic acid nucleotide on each of the 5′ and 3′ ends of the deoxyribonucleotides. In some embodiments, the nucleotide at the 3′ position of the oligonucleotide has a 3′ hydroxyl group or a 3′ thiophosphate.

In some embodiments, the single stranded oligonucleotide comprises phosphorothioate internucleotide linkages. In some embodiments, the single stranded oligonucleotide comprises phosphorothioate internucleotide linkages between at least two nucleotides. In some embodiments, the single stranded oligonucleotide comprises phosphorothioate internucleotide linkages between all nucleotides.

It should be appreciated that the single stranded oligonucleotide can have any combination of modifications as described herein.

The oligonucleotide may comprise a nucleotide sequence having one or more of the following modification patterns.

(a) (X)Xxxxxx, (X)xXxxxx, (X)xxXxxx, (X)xxxXxx, (X)xxxxXx and (X)xxxxxX,

(b) (X)XXxxxx, (X)XxXxxx, (X)XxxXxx, (X)XxxxXx, (X)XxxxxX, (X)xXXxxx, (X)xXxXxx, (X)xXxxXx, (X)xXxxxX, (X)xxXXxx, (X)xxXxXx, (X)xxXxxX, (X)xxxXXx, (X)xxxXxX and (X)xxxxXX,

(c) (X)XXXxxx, (X)xXXXxx, (X)xxXXXx, (X)xxxXXX, (X)XXxXxx, (X)XXxxXx, (X)XXxxxX, (X)xXXxXx, (X)xXXxxX, (X)xxXXxX, (X)XxXXxx, (X)XxxXXx (X)XxxxXX, (X)xXxXXx, (X)xXxxXX, (X)xxXxXX, (X)xXxXxX and (X)XxXxXx,

(d) (X)xxXXX, (X)xXxXXX, (X)xXXxXX, (X)xXXXxX, (X)xXXXXx, (X)XxxXXXX, (X)XxXxXX, (X)XxXXxX, (X)XxXXx, (X)XXxxXX, (X)XXxXxX, (X)XXxXXx, (X)XXXxxX, (X)XXXxXx, and (X)XXXXxx,

(e) (X)xXXXXX, (X)XxXXXX, (X)XXxXXX, (X)XXXxXX, (X)XXXXxX and (X)XXXXXx, and

(f) XXXXXX, XxXXXXX, XXxXXXX, XXXxXXX, XXXXxXX, XXXXXxX and XXXXXXx, in which “X” denotes a nucleotide analogue, (X) denotes an optional nucleotide analogue, and “x” denotes a DNA or RNA nucleotide unit. Each of the above listed patterns may appear one or more times within an oligonucleotide, alone or in combination with any of the other disclosed modification patterns.

Methods for Modulating Gene Expression

In one aspect, the invention relates to methods for modulating gene expression in a cell (e.g., a cell for which PTEN levels are reduced) for research purposes (e.g., to study the function of the gene in the cell). In another aspect, the invention relates to methods for modulating gene expression in a cell (e.g., a cell for which PTEN levels are reduced) for gene or epigenetic therapy. The cells can be in vitro, ex vivo, or in vivo (e.g., in a subject who has a disease resulting from reduced expression or activity of PTEN. In some embodiments, methods for modulating gene expression in a cell comprise delivering a single stranded oligonucleotide as described herein. In some embodiments, delivery of the single stranded oligonucleotide to the cell results in a level of expression of gene that is at least 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 200% or more greater than a level of expression of gene in a control cell to which the single stranded oligonucleotide has not been delivered. In certain embodiments, delivery of the single stranded oligonucleotide to the cell results in a level of expression of gene that is at least 50% greater than a level of expression of gene in a control cell to which the single stranded oligonucleotide has not been delivered.

In another aspect of the invention, methods comprise administering to a subject (e.g. a human) a composition comprising a single stranded oligonucleotide as described herein to increase protein levels in the subject. In some embodiments, the increase in protein levels is at least 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 200%, or more, higher than the amount of a protein in the subject before administering.

As another example, to increase expression of PTEN in a cell, the methods include introducing into the cell a single stranded oligonucleotide that is sufficiently complementary to a PRC2-associated region (e.g., of a long non-coding RNA) that maps to a genomic position encompassing or in proximity to the PTEN gene.

In another aspect of the invention provides methods of treating a condition (e.g., cancer) associated with decreased levels of expression of PTEN in a subject, the method comprising administering a single stranded oligonucleotide as described herein. In some embodiments, the condition is cancer. Examples of cancer include but are not limited to leukemias, lymphomas, myelomas, carcinomas, metastatic carcinomas, sarcomas, adenomas, nervous system cancers and genito-urinary cancers. In some embodiments, the cancer is adult and pediatric acute lymphoblastic leukemia, acute myeloid leukemia, adrenocortical carcinoma, AIDS-related cancers, anal cancer, cancer of the appendix, astrocytoma, basal cell carcinoma, bile duct cancer, bladder cancer, bone cancer, osteosarcoma, fibrous histiocytoma, brain cancer, brain stem glioma, cerebellar astrocytoma, malignant glioma, ependymoma, medulloblastoma, supratentorial primitive neuroectodermal tumors, hypothalamic glioma, breast cancer, male breast cancer, bronchial adenomas, Burkitt lymphoma, carcinoid tumor, carcinoma of unknown origin, central nervous system lymphoma, cerebellar astrocytoma, malignant glioma, cervical cancer, childhood cancers, chronic lymphocytic leukemia, chronic myelogenous leukemia, chronic myeloproliferative disorders, colorectal cancer, cutaneous T-cell lymphoma, endometrial cancer, ependymoma, esophageal cancer, Ewing family tumors, extracranial germ cell tumor, extragonadal germ cell tumor, extrahepatic bile duct cancer, intraocular melanoma, retinoblastoma, gallbladder cancer, gastric cancer, gastrointestinal stromal tumor, extracranial germ cell tumor, extragonadal germ cell tumor, ovarian germ cell tumor, gestational trophoblastic tumor, glioma, hairy cell leukemia, head and neck cancer, hepatocellular cancer, Hodgkin lymphoma, non-Hodgkin lymphoma, hypopharyngeal cancer, hypothalamic and visual pathway glioma, intraocular melanoma, islet cell tumors, Kaposi sarcoma, kidney cancer, renal cell cancer, laryngeal cancer, lip and oral cavity cancer, small cell lung cancer, non-small cell lung cancer, primary central nervous system lymphoma, Waldenstrom macroglobulinema, malignant fibrous histiocytoma, medulloblastoma, melanoma, Merkel cell carcinoma, malignant mesothelioma, squamous neck cancer, multiple endocrine neoplasia syndrome, multiple myeloma, mycosis fungoides, myelodysplastic syndromes, myeloproliferative disorders, chronic myeloproliferative disorders, nasal cavity and paranasal sinus cancer, nasopharyngeal cancer, neuroblastoma, oropharyngeal cancer, ovarian cancer, pancreatic cancer, parathyroid cancer, penile cancer, pharyngeal cancer, pheochromocytoma, pineoblastoma and supratentorial primitive neuroectodermal tumors, pituitary cancer, plasma cell neoplasms, pleuropulmonary blastoma, prostate cancer, rectal cancer, rhabdomyosarcoma, salivary gland cancer, soft tissue sarcoma, uterine sarcoma, Sezary syndrome, non-melanoma skin cancer, small intestine cancer, squamous cell carcinoma, squamous neck cancer, supratentorial primitive neuroectodermal tumors, testicular cancer, throat cancer, thymoma and thymic carcinoma, thyroid cancer, transitional cell cancer, trophoblastic tumors, urethral cancer, uterine cancer, uterine sarcoma, vaginal cancer, vulvar cancer, or Wilms tumor. In some embodiments, the cancer is prostate cancer or breast cancer.

A subject can include a non-human mammal, e.g. mouse, rat, guinea pig, rabbit, cat, dog, goat, cow, or horse. In preferred embodiments, a subject is a human. Single stranded oligonucleotides have been employed as therapeutic moieties in the treatment of disease states in animals, including humans. Single stranded oligonucleotides can be useful therapeutic modalities that can be configured to be useful in treatment regimes for the treatment of cells, tissues and animals, especially humans.

For therapeutics, an animal, preferably a human, suspected of having cancer, e.g., breast or prostate cancer, is treated by administering single stranded oligonucleotide in accordance with this invention. For example, in one non-limiting embodiment, the methods comprise the step of administering to the animal in need of treatment, a therapeutically effective amount of a single stranded oligonucleotide as described herein.

Formulation, Delivery, And Dosing

The oligonucleotides described herein can be formulated for administration to a subject for treating a condition (e.g., cancer) associated with decreased levels of PTEN. It should be understood that the formulations, compositions and methods can be practiced with any of the oligonucleotides disclosed herein.

The formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy. The amount of active ingredient (e.g., an oligonucleotide or compound of the invention) which can be combined with a carrier material to produce a single dosage form will vary depending upon the host being treated, the particular mode of administration, e.g., intradermal or inhalation. The amount of active ingredient which can be combined with a carrier material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect, e.g. tumor regression.

Pharmaceutical formulations of this invention can be prepared according to any method known to the art for the manufacture of pharmaceuticals. Such formulations can contain sweetening agents, flavoring agents, coloring agents and preserving agents. A formulation can be admixtured with nontoxic pharmaceutically acceptable excipients which are suitable for manufacture. Formulations may comprise one or more diluents, emulsifiers, preservatives, buffers, excipients, etc. and may be provided in such forms as liquids, powders, emulsions, lyophilized powders, sprays, creams, lotions, controlled release formulations, tablets, pills, gels, on patches, in implants, etc.

A formulated single stranded oligonucleotide composition can assume a variety of states. In some examples, the composition is at least partially crystalline, uniformly crystalline, and/or anhydrous (e.g., less than 80, 50, 30, 20, or 10% water). In another example, the single stranded oligonucleotide is in an aqueous phase, e.g., in a solution that includes water. The aqueous phase or the crystalline compositions can, e.g., be incorporated into a delivery vehicle, e.g., a liposome (particularly for the aqueous phase) or a particle (e.g., a microparticle as can be appropriate for a crystalline composition). Generally, the single stranded oligonucleotide composition is formulated in a manner that is compatible with the intended method of administration.

In some embodiments, the composition is prepared by at least one of the following methods: spray drying, lyophilization, vacuum drying, evaporation, fluid bed drying, or a combination of these techniques; or sonication with a lipid, freeze-drying, condensation and other self-assembly.

A single stranded oligonucleotide preparation can be formulated or administered (together or separately) in combination with another agent, e.g., another therapeutic agent or an agent that stabilizes a single stranded oligonucleotide, e.g., a protein that complexes with single stranded oligonucleotide. Still other agents include chelators, e.g., EDTA (e.g., to remove divalent cations such as Mg²⁺), salts, RNAse inhibitors (e.g., a broad specificity RNAse inhibitor such as RNAsin) and so forth.

In one embodiment, the single stranded oligonucleotide preparation includes another single stranded oligonucleotide, e.g., a second single stranded oligonucleotide that modulates expression of a second gene or a second single stranded oligonucleotide that modulates expression of the first gene. Still other preparation can include at least 3, 5, ten, twenty, fifty, or a hundred or more different single stranded oligonucleotide species. Such single stranded oligonucleotides can mediated gene expression with respect to a similar number of different genes.

In one embodiment, the single stranded oligonucleotide preparation includes at least a second therapeutic agent (e.g., an agent other than an oligonucleotide). For example, e.g., a single stranded oligonucleotide composition for the treatment of a cancer might further comprise a chemotherapeutic agent.

Route of Delivery

A composition that includes a single stranded oligonucleotide can be delivered to a subject by a variety of routes. Exemplary routes include: intravenous, intradermal, topical, rectal, parenteral, anal, intravaginal, intranasal, pulmonary, ocular. The term “therapeutically effective amount” is the amount of oligonucleotide present in the composition that is needed to provide the desired level of PTEN expression in the subject to be treated to give the anticipated physiological response. The term “physiologically effective amount” is that amount delivered to a subject to give the desired palliative or curative effect. The term “pharmaceutically acceptable carrier” means that the carrier can be administered to a subject with no significant adverse toxicological effects to the subject.

The single stranded oligonucleotide molecules of the invention can be incorporated into pharmaceutical compositions suitable for administration. Such compositions typically include one or more species of single stranded oligonucleotide and a pharmaceutically acceptable carrier. As used herein the language “pharmaceutically acceptable carrier” is intended to include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, compatible with pharmaceutical administration. The use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active compound, use thereof in the compositions is contemplated. Supplementary active compounds can also be incorporated into the compositions.

The pharmaceutical compositions of the present invention may be administered in a number of ways depending upon whether local or systemic treatment is desired and upon the area to be treated. Administration may be topical (including ophthalmic, vaginal, rectal, intranasal, transdermal), oral or parenteral. Parenteral administration includes intravenous drip, subcutaneous, intraperitoneal or intramuscular injection, or intrathecal or intraventricular administration.

The route and site of administration may be chosen to enhance targeting. For example, to target muscle cells, intramuscular injection into the muscles of interest would be a logical choice. Lung cells might be targeted by administering the single stranded oligonucleotide in aerosol form. The vascular endothelial cells could be targeted by coating a balloon catheter with the single stranded oligonucleotide and mechanically introducing the oligonucleotide.

Topical administration refers to the delivery to a subject by contacting the formulation directly to a surface of the subject. The most common form of topical delivery is to the skin, but a composition disclosed herein can also be directly applied to other surfaces of the body, e.g., to the eye, a mucous membrane, to surfaces of a body cavity or to an internal surface. As mentioned above, the most common topical delivery is to the skin. The term encompasses several routes of administration including, but not limited to, topical and transdermal. These modes of administration typically include penetration of the skin's permeability barrier and efficient delivery to the target tissue or stratum. Topical administration can be used as a means to penetrate the epidermis and dermis and ultimately achieve systemic delivery of the composition. Topical administration can also be used as a means to selectively deliver oligonucleotides to the epidermis or dermis of a subject, or to specific strata thereof, or to an underlying tissue.

Formulations for topical administration may include transdermal patches, ointments, lotions, creams, gels, drops, suppositories, sprays, liquids and powders. Conventional pharmaceutical carriers, aqueous, powder or oily bases, thickeners and the like may be necessary or desirable. Coated condoms, gloves and the like may also be useful.

Transdermal delivery is a valuable route for the administration of lipid soluble therapeutics. The dermis is more permeable than the epidermis and therefore absorption is much more rapid through abraded, burned or denuded skin. Inflammation and other physiologic conditions that increase blood flow to the skin also enhance transdermal adsorption. Absorption via this route may be enhanced by the use of an oily vehicle (inunction) or through the use of one or more penetration enhancers. Other effective ways to deliver a composition disclosed herein via the transdermal route include hydration of the skin and the use of controlled release topical patches. The transdermal route provides a potentially effective means to deliver a composition disclosed herein for systemic and/or local therapy. In addition, iontophoresis (transfer of ionic solutes through biological membranes under the influence of an electric field), phonophoresis or sonophoresis (use of ultrasound to enhance the absorption of various therapeutic agents across biological membranes, notably the skin and the cornea), and optimization of vehicle characteristics relative to dose position and retention at the site of administration may be useful methods for enhancing the transport of topically applied compositions across skin and mucosal sites.

Both the oral and nasal membranes offer advantages over other routes of administration. For example, oligonucleotides administered through these membranes may have a rapid onset of action, provide therapeutic plasma levels, avoid first pass effect of hepatic metabolism, and avoid exposure of the oligonucleotides to the hostile gastrointestinal (GI) environment. Additional advantages include easy access to the membrane sites so that the oligonucleotide can be applied, localized and removed easily.

In oral delivery, compositions can be targeted to a surface of the oral cavity, e.g., to sublingual mucosa which includes the membrane of ventral surface of the tongue and the floor of the mouth or the buccal mucosa which constitutes the lining of the cheek. The sublingual mucosa is relatively permeable thus giving rapid absorption and acceptable bioavailability of many agents. Further, the sublingual mucosa is convenient, acceptable and easily accessible.

A pharmaceutical composition of single stranded oligonucleotide may also be administered to the buccal cavity of a human being by spraying into the cavity, without inhalation, from a metered dose spray dispenser, a mixed micellar pharmaceutical formulation as described above and a propellant. In one embodiment, the dispenser is first shaken prior to spraying the pharmaceutical formulation and propellant into the buccal cavity.

Compositions for oral administration include powders or granules, suspensions or solutions in water, syrups, slurries, emulsions, elixirs or non-aqueous media, tablets, capsules, lozenges, or troches. In the case of tablets, carriers that can be used include lactose, sodium citrate and salts of phosphoric acid. Various disintegrants such as starch, and lubricating agents such as magnesium stearate, sodium lauryl sulfate and talc, are commonly used in tablets. For oral administration in capsule form, useful diluents are lactose and high molecular weight polyethylene glycols. When aqueous suspensions are required for oral use, the nucleic acid compositions can be combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring agents can be added.

Parenteral administration includes intravenous drip, subcutaneous, intraperitoneal or intramuscular injection, intrathecal or intraventricular administration. In some embodiments, parental administration involves administration directly to the site of disease (e.g. injection into a tumor).

Formulations for parenteral administration may include sterile aqueous solutions which may also contain buffers, diluents and other suitable additives. Intraventricular injection may be facilitated by an intraventricular catheter, for example, attached to a reservoir. For intravenous use, the total concentration of solutes should be controlled to render the preparation isotonic.

Any of the single stranded oligonucleotides described herein can be administered to ocular tissue. For example, the compositions can be applied to the surface of the eye or nearby tissue, e.g., the inside of the eyelid. For ocular administration, ointments or droppable liquids may be delivered by ocular delivery systems known to the art such as applicators or eye droppers. Such compositions can include mucomimetics such as hyaluronic acid, chondroitin sulfate, hydroxypropyl methylcellulose or poly(vinyl alcohol), preservatives such as sorbic acid, EDTA or benzylchronium chloride, and the usual quantities of diluents and/or carriers. The single stranded oligonucleotide can also be administered to the interior of the eye, and can be introduced by a needle or other delivery device which can introduce it to a selected area or structure.

Pulmonary delivery compositions can be delivered by inhalation by the patient of a dispersion so that the composition, preferably single stranded oligonucleotides, within the dispersion can reach the lung where it can be readily absorbed through the alveolar region directly into blood circulation. Pulmonary delivery can be effective both for systemic delivery and for localized delivery to treat diseases of the lungs.

Pulmonary delivery can be achieved by different approaches, including the use of nebulized, aerosolized, micellular and dry powder-based formulations. Delivery can be achieved with liquid nebulizers, aerosol-based inhalers, and dry powder dispersion devices. Metered-dose devices are preferred. One of the benefits of using an atomizer or inhaler is that the potential for contamination is minimized because the devices are self-contained. Dry powder dispersion devices, for example, deliver agents that may be readily formulated as dry powders. A single stranded oligonucleotide composition may be stably stored as lyophilized or spray-dried powders by itself or in combination with suitable powder carriers. The delivery of a composition for inhalation can be mediated by a dosing timing element which can include a timer, a dose counter, time measuring device, or a time indicator which when incorporated into the device enables dose tracking, compliance monitoring, and/or dose triggering to a patient during administration of the aerosol medicament.

The term “powder” means a composition that consists of finely dispersed solid particles that are free flowing and capable of being readily dispersed in an inhalation device and subsequently inhaled by a subject so that the particles reach the lungs to permit penetration into the alveoli. Thus, the powder is said to be “respirable.” Preferably the average particle size is less than about 10 μm in diameter preferably with a relatively uniform spheroidal shape distribution. More preferably the diameter is less than about 7.5 μm and most preferably less than about 5.0 μm. Usually the particle size distribution is between about 0.1 μm and about 5 μm in diameter, particularly about 0.3 μm to about 5 μm.

The term “dry” means that the composition has a moisture content below about 10% by weight (% w) water, usually below about 5% w and preferably less it than about 3% w. A dry composition can be such that the particles are readily dispersible in an inhalation device to form an aerosol.

The types of pharmaceutical excipients that are useful as carrier include stabilizers such as human serum albumin (HSA), bulking agents such as carbohydrates, amino acids and polypeptides; pH adjusters or buffers; salts such as sodium chloride; and the like. These carriers may be in a crystalline or amorphous form or may be a mixture of the two.

Suitable pH adjusters or buffers include organic salts prepared from organic acids and bases, such as sodium citrate, sodium ascorbate, and the like; sodium citrate is preferred. Pulmonary administration of a micellar single stranded oligonucleotide formulation may be achieved through metered dose spray devices with propellants such as tetrafluoroethane, heptafluoroethane, dimethylfluoropropane, tetrafluoropropane, butane, isobutane, dimethyl ether and other non-CFC and CFC propellants.

Exemplary devices include devices which are introduced into the vasculature, e.g., devices inserted into the lumen of a vascular tissue, or which devices themselves form a part of the vasculature, including stents, catheters, heart valves, and other vascular devices. These devices, e.g., catheters or stents, can be placed in the vasculature of the lung, heart, or leg.

Other devices include non-vascular devices, e.g., devices implanted in the peritoneum, or in organ or glandular tissue, e.g., artificial organs. The device can release a therapeutic substance in addition to a single stranded oligonucleotide, e.g., a device can release insulin.

In one embodiment, unit doses or measured doses of a composition that includes single stranded oligonucleotide are dispensed by an implanted device. The device can include a sensor that monitors a parameter within a subject. For example, the device can include pump, e.g., and, optionally, associated electronics.

Tissue, e.g., cells or organs can be treated with a single stranded oligonucleotide, ex vivo and then administered or implanted in a subject. The tissue can be autologous, allogeneic, or xenogeneic tissue. E.g., tissue can be treated to reduce graft v. host disease. In other embodiments, the tissue is allogeneic and the tissue is treated to treat a disorder characterized by unwanted gene expression in that tissue. E.g., tissue, e.g., hematopoietic cells, e.g., bone marrow hematopoietic cells, can be treated to inhibit unwanted cell proliferation. Introduction of treated tissue, whether autologous or transplant, can be combined with other therapies. In some implementations, the single stranded oligonucleotide treated cells are insulated from other cells, e.g., by a semi-permeable porous barrier that prevents the cells from leaving the implant, but enables molecules from the body to reach the cells and molecules produced by the cells to enter the body. In one embodiment, the porous barrier is formed from alginate.

In one embodiment, a contraceptive device is coated with or contains a single stranded oligonucleotide. Exemplary devices include condoms, diaphragms, IUD (implantable uterine devices, sponges, vaginal sheaths, and birth control devices.

Dosage

In one aspect, the invention features a method of administering a single stranded oligonucleotide (e.g., as a compound or as a component of a composition) to a subject (e.g., a human subject). In one embodiment, the unit dose is between about 10 mg and 25 mg per kg of bodyweight. In one embodiment, the unit dose is between about 1 mg and 100 mg per kg of bodyweight. In one embodiment, the unit dose is between about 0.1 mg and 500 mg per kg of bodyweight. In some embodiments, the unit dose is more than 0.001, 0.005, 0.01, 0.05, 0.1, 0.5, 1, 2, 5, 10, 25, 50 or 100 mg per kg of bodyweight.

The defined amount can be an amount effective to treat or prevent a disease or disorder, e.g., a disease or disorder associated with the PTEN. The unit dose, for example, can be administered by injection (e.g., intravenous or intramuscular), an inhaled dose, or a topical application.

In some embodiments, the unit dose is administered daily. In some embodiments, less frequently than once a day, e.g., less than every 2, 4, 8 or 30 days. In another embodiment, the unit dose is not administered with a frequency (e.g., not a regular frequency). For example, the unit dose may be administered a single time. In some embodiments, the unit dose is administered more than once a day, e.g., once an hour, two hours, four hours, eight hours, twelve hours, etc.

In one embodiment, a subject is administered an initial dose and one or more maintenance doses of a single stranded oligonucleotide. The maintenance dose or doses are generally lower than the initial dose, e.g., one-half less of the initial dose. A maintenance regimen can include treating the subject with a dose or doses ranging from 0.0001 to 100 mg/kg of body weight per day, e.g., 100, 10, 1, 0.1, 0.01, 0.001, or 0.0001 mg per kg of bodyweight per day. The maintenance doses may be administered no more than once every 1, 5, 10, or 30 days. Further, the treatment regimen may last for a period of time which will vary depending upon the nature of the particular disease, its severity and the overall condition of the patient. In some embodiments the dosage may be delivered no more than once per day, e.g., no more than once per 24, 36, 48, or more hours, e.g., no more than once for every 5 or 8 days. Following treatment, the patient can be monitored for changes in his condition and for alleviation of the symptoms of the disease state. The dosage of the oligonucleotide may either be increased in the event the patient does not respond significantly to current dosage levels, or the dose may be decreased if an alleviation of the symptoms of the disease state is observed, if the disease state has been ablated, or if undesired side-effects are observed.

The effective dose can be administered in a single dose or in two or more doses, as desired or considered appropriate under the specific circumstances. If desired to facilitate repeated or frequent infusions, implantation of a delivery device, e.g., a pump, semi-permanent stent (e.g., intravenous, intraperitoneal, intracisternal or intracapsular), or reservoir may be advisable.

In some embodiments, the oligonucleotide pharmaceutical composition includes a plurality of single stranded oligonucleotide species. In another embodiment, the single stranded oligonucleotide species has sequences that are non-overlapping and non-adjacent to another species with respect to a naturally occurring target sequence (e.g., a PRC2-associated region). In another embodiment, the plurality of single stranded oligonucleotide species is specific for different PRC2-associated regions. In another embodiment, the single stranded oligonucleotide is allele specific.

In some cases, a patient is treated with a single stranded oligonucleotide in conjunction with other therapeutic modalities. For example, a patient being treated for cancer may be administered a single stranded oligonucleotide in conjunction with a chemotherapy.

Following successful treatment, it may be desirable to have the patient undergo maintenance therapy to prevent the recurrence of the disease state, wherein the compound of the invention is administered in maintenance doses, ranging from 0.0001 mg to 100 mg per kg of body weight.

The concentration of the single stranded oligonucleotide composition is an amount sufficient to be effective in treating or preventing a disorder or to regulate a physiological condition in humans. The concentration or amount of single stranded oligonucleotide administered will depend on the parameters determined for the agent and the method of administration, e.g. nasal, buccal, pulmonary. For example, nasal formulations may tend to require much lower concentrations of some ingredients in order to avoid irritation or burning of the nasal passages. It is sometimes desirable to dilute an oral formulation up to 10-100 times in order to provide a suitable nasal formulation.

Certain factors may influence the dosage required to effectively treat a subject, including but not limited to the severity of the disease or disorder, previous treatments, the general health and/or age of the subject, and other diseases present. Moreover, treatment of a subject with a therapeutically effective amount of a single stranded oligonucleotide can include a single treatment or, preferably, can include a series of treatments. It will also be appreciated that the effective dosage of a single stranded oligonucleotide used for treatment may increase or decrease over the course of a particular treatment. For example, the subject can be monitored after administering a single stranded oligonucleotide composition. Based on information from the monitoring, an additional amount of the single stranded oligonucleotide composition can be administered.

Dosing is dependent on severity and responsiveness of the disease condition to be treated, with the course of treatment lasting from several days to several months, or until a cure is effected or a diminution of disease state is achieved. Optimal dosing schedules can be calculated from measurements of PTEN expression levels in the body of the patient. Persons of ordinary skill can easily determine optimum dosages, dosing methodologies and repetition rates. Optimum dosages may vary depending on the relative potency of individual compounds, and can generally be estimated based on EC50s found to be effective in in vitro and in vivo animal models. In some embodiments, the animal models include transgenic animals that express a human PTEN. In another embodiment, the composition for testing includes a single stranded oligonucleotide that is complementary, at least in an internal region, to a sequence that is conserved between PTEN in the animal model and the PTEN in a human.

In one embodiment, the administration of the single stranded oligonucleotide composition is parenteral, e.g. intravenous (e.g., as a bolus or as a diffusible infusion), intradermal, intraperitoneal, intramuscular, intrathecal, intraventricular, intracranial, subcutaneous, transmucosal, buccal, sublingual, endoscopic, rectal, oral, vaginal, topical, pulmonary, intranasal, urethral or ocular. Administration can be provided by the subject or by another person, e.g., a health care provider. The composition can be provided in measured doses or in a dispenser which delivers a metered dose. Selected modes of delivery are discussed in more detail below.

Kits

In certain aspects of the invention, kits are provided, comprising a container housing a composition comprising a single stranded oligonucleotide. In some embodiments, the composition is a pharmaceutical composition comprising a single stranded oligonucleotide and a pharmaceutically acceptable carrier. In some embodiments, the individual components of the pharmaceutical composition may be provided in one container. Alternatively, it may be desirable to provide the components of the pharmaceutical composition separately in two or more containers, e.g., one container for single stranded oligonucleotides, and at least another for a carrier compound. The kit may be packaged in a number of different configurations such as one or more containers in a single box. The different components can be combined, e.g., according to instructions provided with the kit. The components can be combined according to a method described herein, e.g., to prepare and administer a pharmaceutical composition. The kit can also include a delivery device.

The present invention is further illustrated by the following Examples, which in no way should be construed as further limiting. The entire contents of all of the references (including literature references, issued patents, published patent applications, and co-pending patent applications) cited throughout this application are hereby expressly incorporated by reference.

EXAMPLES

The invention is further described in the following examples, which do not limit the scope of the invention described in the claims.

Materials and Methods: Real Time PCR

RNA was harvested from the cells using Promega SV 96 Total RNA Isolation system or Trizol omitting the DNAse step. In separate pilot experiments, 50 ng of RNA was determined to be sufficient template for the reverse transcriptase reaction. RNA harvested from cells was normalized so that 50 ng of RNA was input to each reverse transcription reaction. For the few samples that were too dilute to reach this limit, the maximum input volume was added. Reverse transcriptase reaction was performed using the Superscript II kit and real time PCR performed on cDNA samples using icycler SYBR green chemistry (Biorad). A baseline level of mRNA expression for each target gene was determined through quantitative PCR as outlined above. Baseline levels were also determined for mRNA of various housekeeping genes which are constitutively expressed. A “control” housekeeping gene with approximately the same level of baseline expression as the target gene was chosen for comparison purposes.

Cell Culture

Human hepatocyte Hep3B, human hepatocyte HepG2 cells, mouse hepatoma Hepa1-6 cells, and human renal proximal tubule epithelial cells (RPTEC) were cultured using conditions known in the art (see, e.g. Current Protocols in Cell Biology). Details of the cell lines used in the experiments described herein are provided in Table 5.

TABLE 5 Cell lines Culture Cell line Source Species Gender Cell Type Tissue Status Conditions HepG2 ATCC human M hepatocytes liver immortalized Eagle's MEM + 10% FBS Hepa1- ATCC mouse N/A hepatocytes liver immortalized DMEM + 10% FBS 6 Hep3B ATCC human M hepatocytes liver immortalized Eagle's MEM + 10% FBS Hepa ATCC mouse N/A hepatocytes liver immortalized DMEM + 10% FBS 1-6

Oligonucleotide Design

Oligonucleotides were designed within PRC2-interacting regions in order to upregulate PTEN. The sequence and structure of each oligonucleotide is shown in Table 2 or 5. The following table provides a description of the nucleotide analogs, modifications and intranucleotide linkages used for certain oligonucleotides tested and described in Table 2 or 5.

TABLE 3 Oligonucleotide Modifications Symbol Feature Description bio 5′ biotin dAs DNA w/3′ thiophosphate dCs DNA w/3′ thiophosphate dGs DNA w/3′ thiophosphate dTs DNA w/3′ thiophosphate dG DNA enaAs ENA w/3′ thiophosphate enaCs ENA w/3′ thiophosphate enaGs ENA w/3′ thiophosphate enaTs ENA w/3′ thiophosphate fluAs 2′-fluoro w/3′ thiophosphate fluCs 2′-fluoro w/3′ thiophosphate fluGs 2′-fluoro w/3′ thiophosphate fluUs 2′-fluoro w/3′ thiophosphate lnaAs LNA w/3′ thiophosphate lnaCs LNA w/3′ thiophosphate lnaGs LNA w/3′ thiophosphate lnaTs LNA w/3′ thiophosphate omeAs 2′-OMe w/3′ thiophosphate omeCs 2′-OMe w/3′ thiophosphate omeGs 2′-OMe w/3′ thiophosphate omeTs 2′-OMe w/3′ thiophosphate lnaAs-Sup LNA w/3′ thiophosphate at 3′ terminus lnaCs-Sup LNA w/3′ thiophosphate at 3′ terminus lnaGs-Sup LNA w/3′ thiophosphate at 3′ terminus lnaTs-Sup LNA w/3′ thiophosphate at 3′ terminus lnaA-Sup LNA w/3′ OH at 3′ terminus lnaC-Sup LNA w/3′ OH at 3′ terminus lnaG-Sup LNA w/3′ OH at 3′ terminus lnaT-Sup LNA w/3′ OH at 3′ terminus omeA-Sup 2′-OMe w/3′ OH at 3′ terminus omeC-Sup 2′-OMe w/3′ OH at 3′ terminus omeG-Sup 2′-OMe w/3′ OH at 3′ terminus omeU-Sup 2′-OMe w/3′ OH at 3′ terminus dAs-Sup DNA w/3′ thiophosphate at 3′ terminus dCs-Sup DNA w/3′ thiophosphate at 3′ terminus dGs-Sup DNA w/3′ thiophosphate at 3′ terminus dTs-Sup DNA w/3′ thiophosphate at 3′ terminus dA-Sup DNA w/3′ OH at 3′ terminus dC-Sup DNA w/3′ OH at 3′ terminus dG-Sup DNA w/3′ OH at 3′ terminus dT-Sup DNA w/3′ OH at 3′ terminus In Vitro Transfection of Cells with Oligonucleotides

Cells were seeded into each well of 24-well plates at a density of 25,000 cells per 500 uL and transfections were performed with Lipofectamine and the single stranded oligonucleotides. Control wells contained Lipofectamine alone. At 48 hours post-transfection, approximately 200 uL of cell culture supernatants were stored at −80 C for ELISA. At 48 hours post-transfection, RNA was harvested from the cells and quantitative PCR was carried out as outlined above. The percent induction of target mRNA expression by each oligonucleotide was determined by normalizing mRNA levels in the presence of the oligonucleotide to the mRNA levels in the presence of control (Lipofectamine alone). This was compared side-by-side with the increase in mRNA expression of the “control” housekeeping gene.

Results: In Vitro Delivery of Single Stranded Oligonucleotides Upregulated PTEN Expression

Oligonucleotides were designed as candidates for upregulating PTEN expression. Single stranded oligonucleotides were designed to be complementary to a PRC2-interacting region within a sequence as set forth in SEQ ID NO: 1, 2, 3, or 4. Multiple oligonucleotides were tested in at least duplicate. The sequence and structural features of the oligonucleotides are set forth in Table 4. Briefly, cells were transfected in vitro with each of the oligonucleotides as described above. PTEN expression in cells following treatment was evaluated by qRT-PCR. Oligonucleotides that upregulated PTEN expression were identified. Further details are outlined in Table 2 and FIGS. 1 and 2.

Tables

TABLE 1 Hexamers that are not seed sequences of human miRNAs AAAAAA, AAAAAG, AAAACA, AAAAGA, AAAAGC, AAAAGG, AAAAUA, AAACAA, AAACAC, AAACAG, AAACAU, AAACCC, AAACCU, AAACGA, AAACGC, AAACGU, AAACUA, AAACUC, AAACUU, AAAGAU, AAAGCC, AAAGGA, AAAGGG, AAAGUC, AAAUAC, AAAUAU, AAAUCG, AAAUCU, AAAUGC, AAAUGU, AAAUUA, AAAUUG, AACAAC, AACAAG, AACAAU, AACACA, AACACG, AACAGA, AACAGC, AACAGG, AACAUC, AACAUG, AACCAA, AACCAC, AACCAG, AACCAU, AACCCC, AACCCG, AACCGA, AACCGC, AACCGG, AACCUA, AACCUU, AACGAA, AACGAC, AACGAG, AACGAU, AACGCU, AACGGG, AACGGU, AACGUA, AACGUC, AACGUG, AACGUU, AACUAU, AACUCA, AACUCC, AACUCG, AACUGA, AACUGC, AACUGU, AACUUA, AACUUC, AACUUG, AACUUU, AAGAAA, AAGAAG, AAGAAU, AAGACG, AAGAGA, AAGAGC, AAGAGG, AAGAGU, AAGAUU, AAGCAA, AAGCAC, AAGCAG, AAGCAU, AAGCCA, AAGCCC, AAGCCG, AAGCCU, AAGCGA, AAGCGG, AAGCGU, AAGCUA, AAGGAA, AAGGAC, AAGGCU, AAGGGC, AAGGGU, AAGGUU, AAGUAA, AAGUAC, AAGUAU, AAGUCC, AAGUCG, AAGUGA, AAGUGG, AAGUUA, AAGUUU, AAUAAA, AAUAAC, AAUAAG, AAUAAU, AAUACA, AAUACC, AAUACG, AAUAGA, AAUAGC, AAUAGG, AAUAGU, AAUAUC, AAUAUU, AAUCAA, AAUCAU, AAUCCA, AAUCCC, AAUCCG, AAUCGA, AAUCGC, AAUCGU, AAUCUA, AAUCUG, AAUCUU, AAUGAA, AAUGAC, AAUGAG, AAUGAU, AAUGCG, AAUGCU, AAUGGA, AAUGGU, AAUGUA, AAUGUC, AAUGUG, AAUUAA, AAUUAC, AAUUAG, AAUUCC, AAUUCG, AAUUGA, AAUUGG, AAUUGU, AAUUUC, AAUUUG, ACAAAA, ACAAAC, ACAAAG, ACAAAU, ACAACC, ACAACG, ACAACU, ACAAGA, ACAAGC, ACAAGU, ACAAUC, ACAAUG, ACAAUU, ACACAG, ACACCA, ACACCC, ACACCG, ACACCU, ACACGA, ACACGC, ACACGU, ACACUC, ACACUG, ACACUU, ACAGAA, ACAGAC, ACAGCC, ACAGCG, ACAGCU, ACAGGG, ACAGUC, ACAGUG, ACAGUU, ACAUAA, ACAUAC, ACAUCC, ACAUCG, ACAUCU, ACAUGA, ACAUGC, ACAUGU, ACAUUG, ACAUUU, ACCAAA, ACCAAC, ACCAAG, ACCAAU, ACCACC, ACCACG, ACCAGA, ACCAGU, ACCAUA, ACCAUG, ACCAUU, ACCCAA, ACCCAC, ACCCCA, ACCCCG, ACCCGA, ACCCGC, ACCCUA, ACCCUC, ACCCUU, ACCGAA, ACCGAC, ACCGAU, ACCGCA, ACCGCC, ACCGCG, ACCGCU, ACCGGA, ACCGGC, ACCGGU, ACCGUA, ACCGUC, ACCGUG, ACCGUU, ACCUAA, ACCUAC, ACCUAG, ACCUAU, ACCUCA, ACCUCC, ACCUCG, ACCUCU, ACCUGA, ACCUGC, ACCUGU, ACCUUA, ACCUUC, ACCUUU, ACGAAA, ACGAAC, ACGAAG, ACGAAU, ACGACA, ACGACC, ACGACG, ACGACU, ACGAGA, ACGAGC, ACGAGG, ACGAGU, ACGAUA, ACGAUC, ACGAUG, ACGAUU, ACGCAA, ACGCAG, ACGCAU, ACGCCC, ACGCCG, ACGCCU, ACGCGA, ACGCGG, ACGCGU, ACGCUA, ACGCUG, ACGCUU, ACGGAA, ACGGAC, ACGGAG, ACGGAU, ACGGCC, ACGGCG, ACGGCU, ACGGGC, ACGGGG, ACGGGU, ACGGUA, ACGGUC, ACGGUG, ACGGUU, ACGUAA, ACGUAC, ACGUAU, ACGUCC, ACGUCG, ACGUCU, ACGUGA, ACGUGC, ACGUGG, ACGUGU, ACGUUA, ACGUUC, ACGUUG, ACGUUU, ACUAAA, ACUAAG, ACUAAU, ACUACA, ACUACC, ACUACG, ACUACU, ACUAGG, ACUAUC, ACUAUG, ACUAUU, ACUCAU, ACUCCC, ACUCCG, ACUCCU, ACUCGA, ACUCGC, ACUCGG, ACUCUC, ACUCUU, ACUGAG, ACUGAU, ACUGCC, ACUGCG, ACUGCU, ACUGGG, ACUGGU, ACUGUC, ACUUAA, ACUUAC, ACUUAU, ACUUCA, ACUUCC, ACUUCG, ACUUCU, ACUUGA, ACUUGC, ACUUGU, ACUUUA, ACUUUC, ACUUUG, AGAAAA, AGAAAC, AGAAAG, AGAACC, AGAACG, AGAACU, AGAAGC, AGAAGU, AGAAUA, AGAAUC, AGAAUG, AGAAUU, AGACAA, AGACAC, AGACAU, AGACCA, AGACCC, AGACCG, AGACCU, AGACGA, AGACGC, AGACGU, AGACUA, AGACUC, AGACUU, AGAGAC, AGAGAG, AGAGAU, AGAGCC, AGAGCG, AGAGCU, AGAGGC, AGAGGG, AGAGGU, AGAGUA, AGAGUU, AGAUAC, AGAUAG, AGAUAU, AGAUCC, AGAUCG, AGAUCU, AGAUGA, AGAUGC, AGAUGG, AGAUUA, AGAUUC, AGAUUG, AGAUUU, AGCAAC, AGCACA, AGCACG, AGCACU, AGCAGA, AGCAUA, AGCAUC, AGCAUG, AGCCAA, AGCCAU, AGCCCA, AGCCGA, AGCCGC, AGCCGG, AGCCGU, AGCCUA, AGCCUC, AGCGAA, AGCGAG, AGCGAU, AGCGCA, AGCGCC, AGCGCG, AGCGCU, AGCGGA, AGCGGC, AGCGGU, AGCGUA, AGCGUC, AGCGUG, AGCGUU, AGCUAA, AGCUAC, AGCUAG, AGCUAU, AGCUCA, AGCUCC, AGCUCG, AGCUCU, AGCUGA, AGCUGG, AGCUGU, AGCUUC, AGCUUU, AGGAAU, AGGACC, AGGACG, AGGAGA, AGGAGU, AGGAUA, AGGCAA, AGGCAU, AGGCCG, AGGCGA, AGGCGC, AGGCGG, AGGCUA, AGGCUC, AGGCUU, AGGGAC, AGGGAU, AGGGGA, AGGGGU, AGGGUA, AGGGUG, AGGUAA, AGGUAC, AGGUCA, AGGUCC, AGGUCU, AGGUGA, AGGUGC, AGGUGG, AGGUGU, AGGUUC, AGGUUG, AGUAAA, AGUAAG, AGUAAU, AGUACA, AGUACG, AGUAGC, AGUAGG, AGUAUA, AGUAUC, AGUAUG, AGUAUU, AGUCAA, AGUCAC, AGUCAG, AGUCAU, AGUCCA, AGUCCG, AGUCCU, AGUCGA, AGUCGC, AGUCGG, AGUCGU, AGUCUA, AGUCUC, AGUCUG, AGUCUU, AGUGAA, AGUGAC, AGUGCG, AGUGGG, AGUGUC, AGUUAA, AGUUAC, AGUUAG, AGUUCC, AGUUCG, AGUUGA, AGUUGC, AGUUGU, AGUUUA, AGUUUC, AGUUUG, AGUUUU, AUAAAC, AUAAAU, AUAACA, AUAACC, AUAACG, AUAACU, AUAAGA, AUAAGC, AUAAGG, AUAAGU, AUAAUC, AUAAUG, AUAAUU, AUACAC, AUACAG, AUACAU, AUACCA, AUACCC, AUACCG, AUACGA, AUACGC, AUACGG, AUACGU, AUACUA, AUACUC, AUACUG, AUACUU, AUAGAA, AUAGAC, AUAGAU, AUAGCA, AUAGCG, AUAGCU, AUAGGA, AUAGGU, AUAGUA, AUAGUC, AUAGUG, AUAGUU, AUAUAC, AUAUAG, AUAUCC, AUAUCG, AUAUCU, AUAUGA, AUAUGC, AUAUGG, AUAUGU, AUAUUC, AUAUUG, AUAUUU, AUCAAA, AUCAAC, AUCAAG, AUCAAU, AUCACA, AUCACC, AUCACG, AUCAGC, AUCAGG, AUCCAA, AUCCAU, AUCCCC, AUCCCG, AUCCGA, AUCCGC, AUCCGG, AUCCUA, AUCCUC, AUCCUG, AUCGAA, AUCGAC, AUCGAG, AUCGAU, AUCGCA, AUCGCC, AUCGCG, AUCGCU, AUCGGC, AUCGGG, AUCGGU, AUCGUC, AUCGUG, AUCGUU, AUCUAA, AUCUAC, AUCUAG, AUCUAU, AUCUCC, AUCUCG, AUCUGU, AUCUUG, AUCUUU, AUGAAA, AUGAAC, AUGAAG, AUGAAU, AUGACC, AUGACU, AUGAGG, AUGAGU, AUGAUA, AUGAUC, AUGAUU, AUGCAA, AUGCAG, AUGCCA, AUGCCC, AUGCCG, AUGCGA, AUGCGG, AUGCGU, AUGCUC, AUGCUU, AUGGAC, AUGGCC, AUGGGA, AUGGGC, AUGGGU, AUGGUC, AUGGUG, AUGUAC, AUGUAU, AUGUCA, AUGUCC, AUGUCG, AUGUGU, AUGUUA, AUGUUC, AUUAAA, AUUAAC, AUUAAG, AUUAAU, AUUACA, AUUACC, AUUACG, AUUACU, AUUAGA, AUUAGC, AUUAGG, AUUAGU, AUUAUA, AUUAUC, AUUAUG, AUUCAC, AUUCCA, AUUCCG, AUUCCU, AUUCGA, AUUCGC, AUUCGG, AUUCGU, AUUCUA, AUUCUC, AUUCUU, AUUGAA, AUUGAC, AUUGAU, AUUGCC, AUUGCG, AUUGCU, AUUGGA, AUUGGC, AUUGGG, AUUGGU, AUUGUA, AUUGUC, AUUGUG, AUUGUU, AUUUAA, AUUUAG, AUUUAU, AUUUCC, AUUUCG, AUUUCU, AUUUGA, AUUUGC, AUUUGU, AUUUUA, AUUUUC, AUUUUG, AUUUUU, CAAAAG, CAAACA, CAAACC, CAAACG, CAAACU, CAAAGA, CAAAGG, CAAAUA, CAAAUU, CAACAC, CAACAU, CAACCA, CAACCC, CAACCG, CAACGA, CAACGC, CAACGG, CAACGU, CAACUA, CAACUC, CAACUG, CAACUU, CAAGAA, CAAGAC, CAAGAU, CAAGCA, CAAGCC, CAAGCG, CAAGCU, CAAGGA, CAAGGG, CAAGUC, CAAGUG, CAAGUU, CAAUAA, CAAUAC, CAAUAG, CAAUCC, CAAUCG, CAAUCU, CAAUGA, CAAUGC, CAAUGG, CAAUGU, CAAUUC, CAAUUG, CAAUUU, CACAAU, CACACA, CACACG, CACACU, CACAGA, CACAGC, CACAGG, CACAUA, CACAUC, CACAUU, CACCAA, CACCAC, CACCAU, CACCCA, CACCCC, CACCCG, CACCGA, CACCGC, CACCGG, CACCGU, CACCUA, CACCUU, CACGAA, CACGAC, CACGAG, CACGAU, CACGCA, CACGCC, CACGCU, CACGGA, CACGGC, CACGGG, CACGGU, CACGUA, CACGUC, CACGUG, CACGUU, CACUAA, CACUAG, CACUAU, CACUCA, CACUCG, CACUGA, CACUGC, CACUGG, CACUUA, CACUUC, CACUUU, CAGAAA, CAGAAG, CAGAAU, CAGACC, CAGACG, CAGAGC, CAGAUA, CAGAUC, CAGCCG, CAGCCU, CAGCGA, CAGCGC, CAGCGG, CAGCGU, CAGCUC, CAGCUU, CAGGAU, CAGGGG, CAGGGU, CAGGUA, CAGGUC, CAGGUU, CAGUAC, CAGUCG, CAGUUG, CAUAAA, CAUAAC, CAUAAG, CAUAAU, CAUACA, CAUACC, CAUACG, CAUACU, CAUAGA, CAUAGG, CAUAGU, CAUAUA, CAUAUC, CAUAUG, CAUCAA, CAUCAC, CAUCAG, CAUCAU, CAUCCA, CAUCCC, CAUCCG, CAUCGA, CAUCGC, CAUCGG, CAUCGU, CAUCUA, CAUCUC, CAUCUG, CAUCUU, CAUGAA, CAUGAC, CAUGAG, CAUGAU, CAUGCA, CAUGCC, CAUGCG, CAUGCU, CAUGGC, CAUGGG, CAUGGU, CAUGUA, CAUGUC, CAUGUU, CAUUAA, CAUUAC, CAUUAG, CAUUCA, CAUUCC, CAUUCG, CAUUCU, CAUUGA, CAUUGG, CAUUUC, CAUUUG, CAUUUU, CCAAAA, CCAAAC, CCAAAG, CCAAAU, CCAACA, CCAACC, CCAACG, CCAACU, CCAAGA, CCAAGC, CCAAGG, CCAAUC, CCAAUG, CCAAUU, CCACAA, CCACAC, CCACAG, CCACAU, CCACCA, CCACCC, CCACCG, CCACCU, CCACGA, CCACGC, CCACGG, CCACGU, CCACUA, CCACUC, CCACUU, CCAGAA, CCAGAC, CCAGAG, CCAGCC, CCAGGU, CCAGUC, CCAGUU, CCAUAA, CCAUAC, CCAUAG, CCAUAU, CCAUCA, CCAUCC, CCAUCU, CCAUGA, CCAUGC, CCAUGG, CCAUUC, CCAUUG, CCAUUU, CCCAAC, CCCAAG, CCCAAU, CCCACA, CCCAGA, CCCAGC, CCCAGU, CCCAUA, CCCAUC, CCCAUG, CCCAUU, CCCCAA, CCCCAG, CCCCAU, CCCCCC, CCCCCG, CCCCCU, CCCCGA, CCCCGC, CCCCGU, CCCCUA, CCCCUC, CCCGAA, CCCGAC, CCCGAU, CCCGCA, CCCGCU, CCCGGA, CCCGGC, CCCGUA, CCCGUG, CCCGUU, CCCUAA, CCCUAG, CCCUCA, CCCUCU, CCCUGC, CCCUUA, CCCUUC, CCCUUU, CCGAAA, CCGAAC, CCGAAU, CCGACA, CCGACC, CCGACG, CCGACU, CCGAGA, CCGAGG, CCGAGU, CCGAUA, CCGAUC, CCGAUG, CCGAUU, CCGCAA, CCGCAC, CCGCAG, CCGCAU, CCGCCA, CCGCCC, CCGCCG, CCGCCU, CCGCGA, CCGCGC, CCGCGG, CCGCGU, CCGCUA, CCGCUC, CCGCUG, CCGCUU, CCGGAA, CCGGAU, CCGGCA, CCGGCC, CCGGCG, CCGGCU, CCGGGA, CCGGGC, CCGGGG, CCGGGU, CCGGUA, CCGGUC, CCGGUG, CCGUAA, CCGUAG, CCGUAU, CCGUCA, CCGUCC, CCGUCG, CCGUGA, CCGUGU, CCGUUA, CCGUUC, CCGUUG, CCGUUU, CCUAAC, CCUAAG, CCUAAU, CCUACA, CCUACC, CCUACG, CCUACU, CCUAGA, CCUAGC, CCUAGG, CCUAGU, CCUAUA, CCUAUC, CCUAUG, CCUAUU, CCUCAA, CCUCAC, CCUCAG, CCUCAU, CCUCCA, CCUCCC, CCUCCG, CCUCGA, CCUCGC, CCUCGG, CCUCGU, CCUCUA, CCUCUG, CCUGAC, CCUGAU, CCUGCA, CCUGGG, CCUGGU, CCUGUU, CCUUAA, CCUUAC, CCUUAG, CCUUAU, CCUUCG, CCUUGA, CCUUGU, CCUUUA, CCUUUC, CCUUUU, CGAAAA, CGAAAC, CGAAAG, CGAAAU, CGAACA, CGAACC, CGAACG, CGAACU, CGAAGA, CGAAGC, CGAAGG, CGAAGU, CGAAUA, CGAAUC, CGAAUG, CGAAUU, CGACAA, CGACAC, CGACAU, CGACCA, CGACCU, CGACGA, CGACGC, CGACGG, CGACGU, CGACUA, CGACUG, CGACUU, CGAGAA, CGAGAC, CGAGAG, CGAGAU, CGAGCA, CGAGCC, CGAGCG, CGAGCU, CGAGGC, CGAGGG, CGAGGU, CGAGUA, CGAGUC, CGAGUG, CGAGUU, CGAUAA, CGAUAC, CGAUAG, CGAUAU, CGAUCA, CGAUCC, CGAUCG, CGAUCU, CGAUGA, CGAUGC, CGAUGG, CGAUGU, CGAUUA, CGAUUC, CGAUUG, CGAUUU, CGCAAA, CGCAAC, CGCAAG, CGCAAU, CGCACA, CGCACC, CGCACG, CGCAGA, CGCAGC, CGCAGG, CGCAGU, CGCAUA, CGCAUC, CGCAUG, CGCAUU, CGCCAA, CGCCAC, CGCCAG, CGCCAU, CGCCCA, CGCCCC, CGCCCG, CGCCGA, CGCCGC, CGCCGG, CGCCGU, CGCCUA, CGCCUG, CGCCUU, CGCGAA, CGCGAC, CGCGAG, CGCGAU, CGCGCA, CGCGCC, CGCGCG, CGCGCU, CGCGGA, CGCGGC, CGCGGG, CGCGGU, CGCGUA, CGCGUC, CGCGUG, CGCGUU, CGCUAA, CGCUAC, CGCUAG, CGCUAU, CGCUCA, CGCUCC, CGCUCG, CGCUCU, CGCUGA, CGCUGC, CGCUGG, CGCUGU, CGCUUA, CGCUUC, CGCUUG, CGGAAA, CGGAAC, CGGAAG, CGGACA, CGGACC, CGGACG, CGGACU, CGGAGC, CGGAGG, CGGAGU, CGGAUA, CGGAUU, CGGCAA, CGGCAC, CGGCAG, CGGCCA, CGGCCC, CGGCCG, CGGCGC, CGGCGG, CGGCGU, CGGCUA, CGGCUC, CGGCUG, CGGCUU, CGGGAA, CGGGAC, CGGGAG, CGGGAU, CGGGCA, CGGGCC, CGGGCG, CGGGCU, CGGGGU, CGGGUA, CGGGUC, CGGGUG, CGGUAA, CGGUAC, CGGUAG, CGGUAU, CGGUCA, CGGUCG, CGGUCU, CGGUGA, CGGUGG, CGGUGU, CGGUUA, CGGUUC, CGGUUG, CGGUUU, CGUAAA, CGUAAC, CGUAAG, CGUAAU, CGUACA, CGUACG, CGUACU, CGUAGA, CGUAGC, CGUAGG, CGUAGU, CGUAUA, CGUAUC, CGUAUG, CGUAUU, CGUCAA, CGUCAC, CGUCAG, CGUCAU, CGUCCA, CGUCCC, CGUCCG, CGUCCU, CGUCGA, CGUCGG, CGUCGU, CGUCUA, CGUCUC, CGUCUG, CGUCUU, CGUGAA, CGUGAC, CGUGAG, CGUGAU, CGUGCC, CGUGCG, CGUGCU, CGUGGA, CGUGGG, CGUGGU, CGUGUA, CGUGUG, CGUUAA, CGUUAC, CGUUAG, CGUUAU, CGUUCA, CGUUCC, CGUUCG, CGUUCU, CGUUGA, CGUUGC, CGUUGU, CGUUUA, CGUUUC, CGUUUU, CUAAAA, CUAAAC, CUAAAU, CUAACA, CUAACC, CUAACG, CUAACU, CUAAGA, CUAAGC, CUAAGU, CUAAUA, CUAAUC, CUAAUG, CUACAC, CUACAU, CUACCA, CUACCC, CUACCG, CUACCU, CUACGA, CUACGC, CUACGG, CUACGU, CUACUA, CUACUC, CUACUG, CUAGAA, CUAGAG, CUAGAU, CUAGCA, CUAGCC, CUAGCG, CUAGCU, CUAGGA, CUAGGG, CUAGGU, CUAGUG, CUAGUU, CUAUAA, CUAUAG, CUAUAU, CUAUCA, CUAUCC, CUAUCG, CUAUCU, CUAUGA, CUAUGC, CUAUGG, CUAUGU, CUAUUA, CUAUUG, CUCAAC, CUCAAG, CUCAAU, CUCACC, CUCACG, CUCAGC, CUCAUA, CUCAUC, CUCAUG, CUCAUU, CUCCAC, CUCCCC, CUCCCG, CUCCGA, CUCCGC, CUCCGG, CUCCUA, CUCCUC, CUCCUU, CUCGAA, CUCGAC, CUCGAG, CUCGAU, CUCGCA, CUCGCC, CUCGCG, CUCGGG, CUCGGU, CUCGUA, CUCGUC, CUCGUG, CUCGUU, CUCUAA, CUCUAC, CUCUAU, CUCUCA, CUCUCC, CUCUCU, CUCUGC, CUCUGU, CUCUUA, CUCUUG, CUGAAG, CUGACC, CUGACG, CUGAGC, CUGAUA, CUGAUC, CUGCCG, CUGCCU, CUGCGA, CUGCUA, CUGCUU, CUGGAG, CUGGAU, CUGGCG, CUGGGU, CUGUAC, CUGUCA, CUGUCC, CUGUCG, CUGUGG, CUGUGU, CUGUUA, CUGUUU, CUUAAC, CUUAAG, CUUAAU, CUUACC, CUUACG, CUUAGA, CUUAGC, CUUAGG, CUUAGU, CUUAUA, CUUAUC, CUUAUG, CUUAUU, CUUCAG, CUUCAU, CUUCCA, CUUCCC, CUUCCG, CUUCCU, CUUCGA, CUUCGC, CUUCGG, CUUCGU, CUUCUA, CUUGAC, CUUGAG, CUUGAU, CUUGCA, CUUGCC, CUUGCG, CUUGCU, CUUGGC, CUUGGU, CUUGUU, CUUUAC, CUUUAG, CUUUAU, CUUUCA, CUUUCG, CUUUCU, CUUUGA, CUUUGC, CUUUGU, CUUUUA, CUUUUC, CUUUUG, CUUUUU, GAAAAA, GAAAAG, GAAAAU, GAAACC, GAAACG, GAAAGA, GAAAGC, GAAAGU, GAAAUA, GAAAUC, GAAAUG, GAAAUU, GAACAA, GAACAC, GAACAG, GAACAU, GAACCA, GAACCC, GAACCG, GAACCU, GAACGA, GAACGC, GAACGG, GAACGU, GAACUA, GAACUG, GAACUU, GAAGAC, GAAGAG, GAAGCA, GAAGCG, GAAGCU, GAAGUC, GAAUAA, GAAUAC, GAAUAG, GAAUAU, GAAUCC, GAAUCG, GAAUCU, GAAUGA, GAAUGC, GAAUGU, GAAUUA, GAAUUC, GAAUUU, GACAAA, GACAAG, GACAAU, GACACC, GACAGA, GACAGG, GACAUA, GACAUG, GACAUU, GACCAA, GACCAC, GACCAG, GACCCA, GACCCC, GACCCG, GACCGC, GACCGG, GACCGU, GACCUA, GACCUC, GACCUU, GACGAA, GACGAC, GACGAG, GACGAU, GACGCA, GACGCC, GACGCG, GACGCU, GACGGA, GACGGC, GACGGG, GACGGU, GACGUA, GACGUC, GACGUG, GACGUU, GACUAA, GACUAC, GACUAG, GACUAU, GACUCA, GACUCC, GACUCG, GACUGG, GACUGU, GACUUA, GACUUG, GACUUU, GAGAAU, GAGAGA, GAGAGC, GAGAGG, GAGAUA, GAGAUC, GAGCAA, GAGCAU, GAGCCA, GAGCGA, GAGCGG, GAGCGU, GAGGGU, GAGGUC, GAGGUG, GAGUAA, GAGUAG, GAGUCC, GAGUUC, GAGUUU, GAUAAA, GAUAAC, GAUAAG, GAUAAU, GAUACA, GAUACC, GAUACG, GAUACU, GAUAGA, GAUAGC, GAUAGG, GAUAGU, GAUAUA, GAUCAA, GAUCAC, GAUCAU, GAUCCA, GAUCCC, GAUCCU, GAUCGC, GAUCGG, GAUCGU, GAUCUA, GAUCUG, GAUCUU, GAUGAA, GAUGAC, GAUGAG, GAUGCA, GAUGCC, GAUGCG, GAUGCU, GAUGGC, GAUGGG, GAUGGU, GAUGUG, GAUGUU, GAUUAA, GAUUAC, GAUUAG, GAUUAU, GAUUCA, GAUUCG, GAUUCU, GAUUGA, GAUUGC, GAUUUA, GAUUUC, GAUUUG, GAUUUU, GCAAAC, GCAAAG, GCAAAU, GCAACA, GCAACC, GCAAGC, GCAAGU, GCAAUA, GCAAUC, GCAAUG, GCAAUU, GCACAA, GCACAC, GCACAG, GCACCC, GCACCG, GCACCU, GCACGA, GCACGC, GCACGU, GCACUA, GCACUC, GCACUG, GCACUU, GCAGAU, GCAGCC, GCAGCG, GCAGGC, GCAGUA, GCAGUC, GCAGUG, GCAGUU, GCAUAA, GCAUAG, GCAUAU, GCAUCG, GCAUCU, GCAUGA, GCAUGC, GCAUGG, GCAUGU, GCAUUA, GCAUUC, GCAUUG, GCAUUU, GCCAAA, GCCAAC, GCCAAU, GCCACA, GCCACC, GCCACG, GCCAGA, GCCAGU, GCCAUA, GCCAUC, GCCAUG, GCCAUU, GCCCAA, GCCCAC, GCCCAG, GCCCCG, GCCCGA, GCCCGG, GCCCGU, GCCGAA, GCCGAC, GCCGAG, GCCGAU, GCCGCA, GCCGCU, GCCGGA, GCCGGC, GCCGGG, GCCGGU, GCCGUA, GCCGUC, GCCGUG, GCCGUU, GCCUAA, GCCUAU, GCCUCA, GCCUCC, GCCUCG, GCCUGA, GCCUUA, GCCUUU, GCGAAA, GCGAAC, GCGAAG, GCGAAU, GCGACC, GCGACG, GCGACU, GCGAGA, GCGAGC, GCGAGG, GCGAGU, GCGAUA, GCGAUC, GCGAUG, GCGAUU, GCGCAA, GCGCAC, GCGCAG, GCGCAU, GCGCCA, GCGCCC, GCGCCU, GCGCGA, GCGCGU, GCGCUA, GCGCUC, GCGCUG, GCGCUU, GCGGAA, GCGGAC, GCGGAU, GCGGCA, GCGGCC, GCGGCU, GCGGGA, GCGGUA, GCGGUC, GCGGUU, GCGUAA, GCGUAC, GCGUAG, GCGUAU, GCGUCA, GCGUCC, GCGUCG, GCGUCU, GCGUGA, GCGUGC, GCGUGG, GCGUGU, GCGUUA, GCGUUC, GCGUUG, GCGUUU, GCUAAA, GCUAAC, GCUAAG, GCUAAU, GCUACC, GCUACG, GCUACU, GCUAGA, GCUAGG, GCUAGU, GCUAUA, GCUAUC, GCUAUU, GCUCAA, GCUCAC, GCUCAG, GCUCAU, GCUCCA, GCUCCC, GCUCCG, GCUCGA, GCUCGC, GCUCGU, GCUCUA, GCUCUC, GCUCUU, GCUGAA, GCUGAC, GCUGAU, GCUGCA, GCUGCC, GCUGCG, GCUGCU, GCUGUG, GCUGUU, GCUUAC, GCUUAG, GCUUAU, GCUUCA, GCUUCG, GCUUGA, GCUUGG, GCUUGU, GCUUUA, GCUUUG, GGAAAG, GGAACA, GGAACC, GGAACG, GGAACU, GGAAGU, GGAAUA, GGAAUC, GGAAUU, GGACAA, GGACAC, GGACAG, GGACAU, GGACCG, GGACGA, GGACGC, GGACGU, GGACUA, GGACUC, GGACUU, GGAGAC, GGAGCA, GGAGCG, GGAGGG, GGAGUA, GGAUAA, GGAUAC, GGAUCA, GGAUCC, GGAUCG, GGAUCU, GGAUGC, GGAUUA, GGAUUG, GGCAAU, GGCACA, GGCACU, GGCAGA, GGCAUA, GGCAUC, GGCCAC, GGCCAG, GGCCCC, GGCCGA, GGCCGC, GGCCGU, GGCCUA, GGCCUG, GGCCUU, GGCGAA, GGCGAG, GGCGAU, GGCGCA, GGCGCU, GGCGGU, GGCGUA, GGCGUC, GGCGUG, GGCGUU, GGCUAA, GGCUAC, GGCUAG, GGCUAU, GGCUCC, GGCUCG, GGCUGA, GGCUUA, GGCUUC, GGCUUG, GGGAAU, GGGACA, GGGAGA, GGGAGU, GGGAUA, GGGAUU, GGGCAA, GGGCAC, GGGCAG, GGGCCG, GGGCGG, GGGGCC, GGGGGG, GGGGGU, GGGGUA, GGGUAC, GGGUAU, GGGUCA, GGGUCC, GGGUCG, GGGUGA, GGGUGC, GGGUUA, GGGUUG, GGUAAA, GGUAAC, GGUAAG, GGUAAU, GGUACA, GGUACC, GGUACG, GGUACU, GGUAGC, GGUAGG, GGUAGU, GGUAUA, GGUAUC, GGUAUG, GGUCAA, GGUCAC, GGUCAG, GGUCAU, GGUCCA, GGUCCG, GGUCCU, GGUCGA, GGUCGC, GGUCGG, GGUCGU, GGUCUC, GGUCUU, GGUGAA, GGUGAC, GGUGAU, GGUGCA, GGUGCC, GGUGGC, GGUGUA, GGUGUC, GGUUAA, GGUUAG, GGUUAU, GGUUCA, GGUUCC, GGUUCG, GGUUGC, GGUUUC, GGUUUU, GUAAAA, GUAAAG, GUAAAU, GUAACC, GUAACG, GUAACU, GUAAGA, GUAAGC, GUAAGG, GUAAGU, GUAAUA, GUAAUC, GUAAUG, GUAAUU, GUACAA, GUACAC, GUACAG, GUACAU, GUACCA, GUACCC, GUACCG, GUACCU, GUACGA, GUACGC, GUACGG, GUACGU, GUACUA, GUACUC, GUACUG, GUACUU, GUAGAA, GUAGAC, GUAGCA, GUAGCC, GUAGCG, GUAGCU, GUAGGA, GUAGGC, GUAGGG, GUAGGU, GUAGUA, GUAGUC, GUAUAA, GUAUAC, GUAUAG, GUAUAU, GUAUCA, GUAUCG, GUAUCU, GUAUGA, GUAUGC, GUAUGG, GUAUUA, GUAUUG, GUAUUU, GUCAAA, GUCAAG, GUCAAU, GUCACA, GUCACC, GUCACG, GUCAGA, GUCAGC, GUCAGG, GUCAUA, GUCAUC, GUCAUG, GUCCAA, GUCCAC, GUCCAU, GUCCCC, GUCCCU, GUCCGA, GUCCGC, GUCCGG, GUCCGU, GUCCUA, GUCCUG, GUCCUU, GUCGAA, GUCGAC, GUCGAG, GUCGAU, GUCGCA, GUCGCC, GUCGCG, GUCGCU, GUCGGA, GUCGGC, GUCGGG, GUCGGU, GUCGUA, GUCGUC, GUCGUU, GUCUAA, GUCUAG, GUCUCA, GUCUCC, GUCUCG, GUCUGA, GUCUGG, GUCUGU, GUCUUC, GUCUUU, GUGAAA, GUGAAC, GUGAAG, GUGACC, GUGACG, GUGAGA, GUGAGC, GUGAGU, GUGAUC, GUGAUG, GUGAUU, GUGCAC, GUGCAU, GUGCCC, GUGCCG, GUGCGA, GUGCGG, GUGCGU, GUGCUA, GUGCUC, GUGCUG, GUGGAG, GUGGCG, GUGGCU, GUGGGU, GUGGUC, GUGGUG, GUGUAA, GUGUAG, GUGUCG, GUGUGA, GUGUGC, GUGUGU, GUGUUG, GUGUUU, GUUAAA, GUUAAC, GUUAAG, GUUACA, GUUACC, GUUACG, GUUACU, GUUAGA, GUUAGC, GUUAGU, GUUAUA, GUUAUC, GUUAUG, GUUAUU, GUUCAA, GUUCAC, GUUCAG, GUUCCA, GUUCCG, GUUCGA, GUUCGC, GUUCGG, GUUCGU, GUUCUA, GUUCUG, GUUGAA, GUUGAC, GUUGAG, GUUGAU, GUUGCG, GUUGCU, GUUGGA, GUUGGC, GUUGGU, GUUGUC, GUUGUG, GUUGUU, GUUUAA, GUUUAC, GUUUAG, GUUUAU, GUUUCA, GUUUCC, GUUUCU, GUUUGA, GUUUGC, GUUUGG, GUUUGU, GUUUUA, GUUUUC, GUUUUU, UAAAAA, UAAAAC, UAAAAG, UAAAAU, UAAACA, UAAACC, UAAACG, UAAACU, UAAAGA, UAAAGG, UAAAGU, UAAAUA, UAAAUC, UAAAUG, UAAAUU, UAACAA, UAACAC, UAACAG, UAACCA, UAACCC, UAACCG, UAACCU, UAACGA, UAACGC, UAACGG, UAACGU, UAACUA, UAACUG, UAACUU, UAAGAG, UAAGAU, UAAGCA, UAAGCC, UAAGCG, UAAGCU, UAAGGA, UAAGGC, UAAGGG, UAAGGU, UAAGUA, UAAGUC, UAAGUG, UAAGUU, UAAUAA, UAAUCA, UAAUCC, UAAUCG, UAAUCU, UAAUGA, UAAUGG, UAAUGU, UAAUUA, UAAUUC, UAAUUG, UACAAC, UACAAG, UACAAU, UACACC, UACACG, UACACU, UACAGA, UACAGC, UACAUA, UACAUC, UACAUU, UACCAA, UACCAC, UACCAG, UACCAU, UACCCC, UACCCG, UACCCU, UACCGA, UACCGC, UACCGG, UACCGU, UACCUA, UACCUG, UACGAA, UACGAC, UACGAG, UACGAU, UACGCA, UACGCC, UACGCG, UACGCU, UACGGC, UACGGG, UACGGU, UACGUA, UACGUC, UACGUG, UACGUU, UACUAA, UACUAC, UACUAG, UACUAU, UACUCA, UACUCC, UACUCG, UACUCU, UACUGA, UACUGC, UACUGG, UACUUA, UACUUG, UACUUU, UAGAAA, UAGAAG, UAGAAU, UAGACA, UAGACG, UAGAGA, UAGAGC, UAGAGU, UAGAUA, UAGAUC, UAGAUG, UAGCAU, UAGCCC, UAGCCG, UAGCCU, UAGCGA, UAGCGC, UAGCGU, UAGCUA, UAGCUC, UAGCUG, UAGGAA, UAGGAU, UAGGCG, UAGGCU, UAGGGU, UAGGUC, UAGGUG, UAGGUU, UAGUAA, UAGUAC, UAGUAG, UAGUAU, UAGUCA, UAGUCG, UAGUGU, UAGUUA, UAGUUC, UAGUUG, UAGUUU, UAUAAC, UAUAAG, UAUACU, UAUAGA, UAUAGC, UAUAGG, UAUAGU, UAUAUA, UAUAUC, UAUAUG, UAUAUU, UAUCAA, UAUCAC, UAUCAU, UAUCCA, UAUCCC, UAUCCG, UAUCCU, UAUCGA, UAUCGC, UAUCGG, UAUCGU, UAUCUA, UAUCUC, UAUCUG, UAUCUU, UAUGAA, UAUGAC, UAUGAG, UAUGAU, UAUGCA, UAUGCG, UAUGCU, UAUGGA, UAUGGC, UAUGUC, UAUGUG, UAUGUU, UAUUAG, UAUUCA, UAUUCC, UAUUCG, UAUUCU, UAUUGA, UAUUGG, UAUUUA, UAUUUC, UAUUUG, UAUUUU, UCAAAA, UCAAAC, UCAAAG, UCAACC, UCAACU, UCAAGA, UCAAGC, UCAAUA, UCAAUC, UCAAUG, UCAAUU, UCACCC, UCACCG, UCACCU, UCACGA, UCACGC, UCACGG, UCACGU, UCACUA, UCACUC, UCACUU, UCAGAA, UCAGAC, UCAGAG, UCAGCG, UCAGCU, UCAGGA, UCAGGC, UCAGGU, UCAGUC, UCAGUU, UCAUAA, UCAUCA, UCAUCC, UCAUCG, UCAUGC, UCAUGG, UCAUGU, UCAUUA, UCAUUG, UCCAAA, UCCAAC, UCCAAG, UCCAAU, UCCACA, UCCACC, UCCACG, UCCAGC, UCCAGG, UCCAUA, UCCAUC, UCCAUU, UCCCAA, UCCCAG, UCCCAU, UCCCCC, UCCCCG, UCCCCU, UCCCGA, UCCCGC, UCCCGG, UCCCGU, UCCCUA, UCCCUC, UCCGAA, UCCGAC, UCCGAG, UCCGAU, UCCGCA, UCCGCC, UCCGGA, UCCGGC, UCCGGU, UCCGUA, UCCGUC, UCCGUG, UCCUAA, UCCUCA, UCCUCG, UCCUCU, UCCUGC, UCCUGU, UCCUUA, UCCUUC, UCCUUU, UCGAAA, UCGAAC, UCGAAG, UCGAAU, UCGACA, UCGACC, UCGACG, UCGACU, UCGAGA, UCGAGC, UCGAGG, UCGAUA, UCGAUC, UCGAUG, UCGAUU, UCGCAA, UCGCAC, UCGCAG, UCGCAU, UCGCCA, UCGCCC, UCGCCG, UCGCCU, UCGCGA, UCGCGC, UCGCGU, UCGCUA, UCGCUC, UCGGAA, UCGGAC, UCGGAG, UCGGAU, UCGGCA, UCGGCU, UCGGGG, UCGGGU, UCGGUC, UCGGUG, UCGGUU, UCGUAA, UCGUAC, UCGUAG, UCGUAU, UCGUCA, UCGUCC, UCGUCG, UCGUCU, UCGUGA, UCGUGU, UCGUUA, UCGUUC, UCGUUG, UCGUUU, UCUAAC, UCUAAG, UCUAAU, UCUACA, UCUACC, UCUACG, UCUACU, UCUAGC, UCUAGG, UCUAGU, UCUAUA, UCUAUC, UCUAUG, UCUAUU, UCUCAG, UCUCAU, UCUCCG, UCUCGC, UCUCGG, UCUCGU, UCUCUC, UCUGAA, UCUGAU, UCUGCA, UCUGCG, UCUGCU, UCUGGC, UCUGGU, UCUGUC, UCUGUG, UCUGUU, UCUUAA, UCUUAC, UCUUAG, UCUUAU, UCUUCA, UCUUCC, UCUUCG, UCUUCU, UCUUGC, UCUUGG, UCUUGU, UCUUUA, UCUUUC, UCUUUG, UCUUUU, UGAAAA, UGAAAC, UGAACA, UGAACC, UGAAGG, UGAAUC, UGAAUG, UGACAA, UGACAC, UGACAG, UGACCA, UGACCC, UGACCG, UGACGA, UGACGC, UGACGG, UGACGU, UGACUA, UGACUC, UGACUU, UGAGAG, UGAGAU, UGAGCA, UGAGCC, UGAGCU, UGAGGC, UGAGGU, UGAGUA, UGAGUU, UGAUAC, UGAUAG, UGAUAU, UGAUCA, UGAUCG, UGAUCU, UGAUGA, UGAUGC, UGAUGG, UGAUGU, UGAUUA, UGAUUC, UGAUUG, UGAUUU, UGCAAC, UGCAAG, UGCACA, UGCACG, UGCAGG, UGCAGU, UGCAUC, UGCCCA, UGCCCC, UGCCCG, UGCCGA, UGCCGC, UGCCGG, UGCCGU, UGCCUA, UGCCUC, UGCCUG, UGCCUU, UGCGAA, UGCGAC, UGCGAU, UGCGCC, UGCGCG, UGCGCU, UGCGGC, UGCGGG, UGCGGU, UGCGUA, UGCGUC, UGCGUG, UGCGUU, UGCUAC, UGCUAU, UGCUCC, UGCUCG, UGCUGC, UGCUGG, UGCUGU, UGCUUA, UGCUUU, UGGAAC, UGGAAG, UGGAGC, UGGAUC, UGGAUU, UGGCAA, UGGCAC, UGGCAG, UGGCCG, UGGCCU, UGGCGA, UGGCGC, UGGCGU, UGGCUA, UGGCUC, UGGCUU, UGGGAA, UGGGCA, UGGGCC, UGGGGC, UGGGUC, UGGUAA, UGGUAG, UGGUAU, UGGUCC, UGGUCG, UGGUCU, UGGUGA, UGGUGC, UGGUGG, UGGUGU, UGGUUA, UGGUUG, UGUAAA, UGUAAC, UGUAAG, UGUACC, UGUACG, UGUACU, UGUAGA, UGUAGC, UGUAGU, UGUAUC, UGUAUU, UGUCAA, UGUCAC, UGUCAG, UGUCAU, UGUCCA, UGUCCC, UGUCCG, UGUCGA, UGUCGC, UGUCGG, UGUCGU, UGUCUA, UGUCUC, UGUGAC, UGUGAG, UGUGAU, UGUGCA, UGUGGU, UGUGUA, UGUGUU, UGUUAC, UGUUAG, UGUUAU, UGUUCA, UGUUCC, UGUUCG, UGUUGG, UGUUGU, UGUUUA, UGUUUC, UGUUUG, UGUUUU, UUAAAA, UUAAAC, UUAAAG, UUAAAU, UUAACC, UUAACG, UUAACU, UUAAGU, UUAAUA, UUAAUC, UUAAUG, UUAAUU, UUACAA, UUACAC, UUACAG, UUACAU, UUACCA, UUACCC, UUACCG, UUACCU, UUACGA, UUACGC, UUACGG, UUACGU, UUACUA, UUACUC, UUACUG, UUACUU, UUAGAA, UUAGAC, UUAGCC, UUAGCG, UUAGCU, UUAGGC, UUAGGU, UUAGUA, UUAGUC, UUAGUU, UUAUAA, UUAUAC, UUAUAG, UUAUAU, UUAUCC, UUAUCG, UUAUCU, UUAUGA, UUAUGG, UUAUGU, UUAUUA, UUAUUC, UUAUUG, UUAUUU, UUCAAC, UUCAAU, UUCACA, UUCACC, UUCACG, UUCACU, UUCAGC, UUCAGG, UUCAGU, UUCAUA, UUCAUC, UUCAUG, UUCAUU, UUCCAA, UUCCCA, UUCCCG, UUCCGA, UUCCGU, UUCCUU, UUCGAA, UUCGAC, UUCGAG, UUCGAU, UUCGCA, UUCGCC, UUCGCG, UUCGCU, UUCGGA, UUCGGC, UUCGGG, UUCGGU, UUCGUA, UUCGUC, UUCGUG, UUCGUU, UUCUAC, UUCUAG, UUCUCA, UUCUCG, UUCUGG, UUCUUA, UUCUUU, UUGAAA, UUGAAC, UUGAAG, UUGAAU, UUGACC, UUGACG, UUGACU, UUGAGA, UUGAGC, UUGAGU, UUGAUA, UUGAUC, UUGAUG, UUGAUU, UUGCAA, UUGCAC, UUGCAG, UUGCAU, UUGCCC, UUGCCG, UUGCGA, UUGCGC, UUGCGG, UUGCGU, UUGCUA, UUGCUC, UUGCUG, UUGCUU, UUGGAA, UUGGAG, UUGGCC, UUGGCG, UUGGCU, UUGGGC, UUGGGU, UUGGUA, UUGGUG, UUGUAA, UUGUAC, UUGUCA, UUGUCG, UUGUCU, UUGUGC, UUGUGG, UUGUUA, UUGUUG, UUGUUU, UUUAAA, UUUAAC, UUUAAG, UUUAAU, UUUACA, UUUACC, UUUACG, UUUACU, UUUAGA, UUUAGC, UUUAGG, UUUAGU, UUUAUA, UUUAUC, UUUAUG, UUUAUU, UUUCAU, UUUCCA, UUUCCG, UUUCCU, UUUCGA, UUUCGC, UUUCGG, UUUCGU, UUUCUA, UUUCUC, UUUCUG, UUUCUU, UUUGAA, UUUGAC, UUUGAG, UUUGAU, UUUGCC, UUUGCU, UUUGGA, UUUGGC, UUUGGG, UUUGGU, UUUGUA, UUUGUC, UUUGUU, UUUUAA, UUUUAG, UUUUAU, UUUUCC, UUUUCG, UUUUCU, UUUUGA, UUUUGC, UUUUGG, UUUUGU, UUUUUA, UUUUUC, UUUUUU

TABLE 2 Oligonucleotide sequences made for testing in the lab. Oligo Time SeqID Name Avg RQ Avg RQ SE Target [oligo] cell line (hr) Assay Type 89008 PTEN-01 2.07734157 0.07716663 PTEN 20 HepG2 48 qRTPCR m02 89009 PTEN-02 1.26854341 0.16243777 PTEN 20 HepG2 48 qRTPCR m02 89010 PTEN-03 1.30714473 0.33072241 PTEN 20 HepG2 48 qRTPCR m02 89011 PTEN-04 1.43075199 0.23754811 PTEN 20 HepG2 48 qRTPCR m02 1531 PTEN-05 2.48295792 0.17894507 PTEN 20 HepG2 48 qRTPCR m02 2270 PTEN-06 1.95904764 0.07701882 PTEN 20 HepG2 48 qRTPCR m02 2219 PTEN-07 1.41561727 0.20169914 PTEN 20 HepG2 48 qRTPCR m02 3435 PTEN-08 2.38066121 0.32688117 PTEN 20 HepG2 48 qRTPCR m02 3385 PTEN-09 1.77863697 0.51981065 PTEN 20 HepG2 48 qRTPCR m02 4787 PTEN-10 1.53628756 0.04477097 PTEN 20 HepG2 48 qRTPCR m02 4757 PTEN-11 2.00722045 0.03907423 PTEN 20 HepG2 48 qRTPCR m02 24934 PTEN-12 2.87341341 0.22858809 PTEN 20 HepG2 48 qRTPCR m02 24915 PTEN-13 1.39985102 0.27951483 PTEN 20 HepG2 48 qRTPCR m02 39332 PTEN-14 1.13225265 0.28233818 PTEN 20 HepG2 48 qRTPCR m02 39286 PTEN-15 2.06522348 0.52388625 PTEN 20 HepG2 48 qRTPCR m02 41316 PTEN-16 2.52617646 0.34816317 PTEN 20 HepG2 48 qRTPCR m02 41283 PTEN-17 0.90722331 0.03658693 PTEN 20 HepG2 48 qRTPCR m02 89012 PTEN-18 1.68961825 0.22045151 PTEN 20 HepG2 48 qRTPCR m02 89013 PTEN-19 1.62789613 0.12130118 PTEN 20 HepG2 48 qRTPCR m02 89014 PTEN-20 1.22542567 0.05148674 PTEN 20 HepG2 48 qRTPCR m02 89015 PTEN-21 2.42492141 0.18846349 PTEN 20 HepG2 48 qRTPCR m02 51816 PTEN-22 1.42177642 0.32012534 PTEN 20 HepG2 48 qRTPCR m02 61111 PTEN-23 2.79874813 0.41016463 PTEN 20 HepG2 48 qRTPCR m02 61047 PTEN-24 1.95805572 0.39009138 PTEN 20 HepG2 48 qRTPCR m02 89016 PTEN-25 0.70686318 0.0728727 PTEN 20 HepG2 48 qRTPCR m02 89017 PTEN-26 2.02768836 0.38003317 PTEN 20 HepG2 48 qRTPCR m02 89018 PTEN-27 4.00051813 0.78898907 PTEN 20 HepG2 48 qRTPCR m02 89019 PTEN-28 2.60996786 0.27580702 PTEN 20 HepG2 48 qRTPCR m02 74236 PTEN-29 1.66419883 0.10743023 PTEN 20 HepG2 48 qRTPCR m02 74236 PTEN-29 0.1455604 0.08859417 PTEN 20 HepG2 48 qRTPCR m08 89028 GAP D H- 0.85279659 0.23907675 PTEN 20 HepG2 48 qRTPCR 01 m08 Ctrl Un 1.0025582 0.08223117 PTEN 0 HepG2 48 qRTPCR 89020 PTEN-31 0.92246603 0.01811418 PTEN 20 HepG2 48 qRTPCR m09 76350 PTEN-32 0.59041966 0.0553571 PTEN 20 HepG2 48 qRTPCR m02 76389 PTEN-33 0.70839633 0.04445999 PTEN 20 HepG2 48 qRTPCR m08 89021 PTEN-34 0.91015271 0.0100545 PTEN 20 HepG2 48 qRTPCR m09 89022 PTEN-35 1.67446482 0.03672742 PTEN 20 HepG2 48 qRTPCR m02 89023 PTEN-36 0.20413836 0.00285569 PTEN 20 HepG2 48 qRTPCR m08 89024 PTEN-37 0.8558968 0.11695596 PTEN 20 HepG2 48 qRTPCR m09 80510 PTEN-38 1.27326102 0.06420006 PTEN 20 HepG2 48 qRTPCR m02 80568 PTEN-39 1.09455124 0.02327048 PTEN 20 HepG2 48 qRTPCR m08 89025 PTEN-40 1.01353301 0.06007095 PTEN 20 HepG2 48 qRTPCR m09 Ctrl Lipo 1.00879958 0.02091684 PTEN 0 HepG2 48 qRTPCR Ctrl Un 1.00106773 0.03209554 PTEN 0 HepG2 48 qRTPCR 89008 PTEN-01 1.16942963 0.27074957 PTEN 40 HepG2 48 qRTPCR m02 89009 PTEN-02 0.58364213 0.08602143 PTEN 40 HepG2 48 qRTPCR m02 89010 PTEN-03 0.57577003 0.1469602 PTEN 40 HepG2 48 qRTPCR m02 89011 PTEN-04 0.74661135 0.21933073 PTEN 40 HepG2 48 qRTPCR m02 1531 PTEN-05 1.0956027 0.25635873 PTEN 40 HepG2 48 qRTPCR m02 2270 PTEN-06 1.24117945 0.06291238 PTEN 40 HepG2 48 qRTPCR m02 2219 PTEN-07 0.99520541 0.09748897 PTEN 40 HepG2 48 qRTPCR m02 3435 PTEN-08 1.14301868 0.11760352 PTEN 40 HepG2 48 qRTPCR m02 3385 PTEN-09 0.79500619 0.0643118 PTEN 40 HepG2 48 qRTPCR m02 4787 PTEN-10 0.91090948 0.09807166 PTEN 40 HepG2 48 qRTPCR m02 4757 PTEN-11 1.29538626 0.10511705 PTEN 40 HepG2 48 qRTPCR m02 24934 PTEN-12 1.5806376 0.1204557 PTEN 40 HepG2 48 qRTPCR m02 24915 PTEN-13 0.89485268 0.06086845 PTEN 40 HepG2 48 qRTPCR m02 39332 PTEN-14 0.53139911 0.04823343 PTEN 40 HepG2 48 qRTPCR m02 39286 PTEN-15 1.1093499 0.16465839 PTEN 40 HepG2 48 qRTPCR m02 41316 PTEN-16 1.66867704 0.22298241 PTEN 40 HepG2 48 qRTPCR m02 41283 PTEN-17 0.58678397 0.07173485 PTEN 40 HepG2 48 qRTPCR m02 89012 PTEN-18 0.89349839 0.10026699 PTEN 40 HepG2 48 qRTPCR m02 89013 PTEN-19 1.11350447 0.1080962 PTEN 40 HepG2 48 qRTPCR m02 89014 PTEN-20 0.66291212 0.09468355 PTEN 40 HepG2 48 qRTPCR m02 89015 PTEN-21 1.62278391 0.5136251 PTEN 40 HepG2 48 qRTPCR m02 51816 PTEN-22 0.84245363 0.07213382 PTEN 40 HepG2 48 qRTPCR m02 61111 PTEN-23 1.60469847 0.37430621 PTEN 40 HepG2 48 qRTPCR m02 61047 PTEN-24 1.31940485 0.50246153 PTEN 40 HepG2 48 qRTPCR m02 89016 PTEN-25 0.49625983 0.0643317 PTEN 40 HepG2 48 qRTPCR m02 89017 PTEN-26 2.04149224 0.23998972 PTEN 40 HepG2 48 qRTPCR m02 89018 PTEN-27 2.87891201 0.42448096 PTEN 40 HepG2 48 qRTPCR m02 89019 PTEN-28 1.3180416 0.29901882 PTEN 40 HepG2 48 qRTPCR m02 74236 PTEN-29 0.87647912 0.04578777 PTEN 40 HepG2 48 qRTPCR m02 74236 PTEN-29 0.32506054 0.08996561 PTEN 40 HepG2 48 qRTPCR m08 89028 GAP D H- 0.53336134 0.20011246 PTEN 50 HepG2 48 qRTPCR 01 m08 Ctrl Lipo 0.60524214 0.0625741 PTEN 0 HepG2 48 qRTPCR Ctrl Un 1.0025582 0.08223117 PTEN 0 HepG2 48 qRTPCR 89020 PTEN-31 0.79191976 0.02979202 PTEN 40 HepG2 48 qRTPCR m09 76350 PTEN-32 0.54328864 0.00958811 PTEN 40 HepG2 48 qRTPCR m02 76389 PTEN-33 0.73927941 0.08871459 PTEN 40 HepG2 48 qRTPCR m08 89021 PTEN-34 0.76155003 0.01629929 PTEN 40 HepG2 48 qRTPCR m09 89022 PTEN-35 1.52719074 0.05398883 PTEN 40 HepG2 48 qRTPCR m02 89023 PTEN-36 0.28703011 0.04288889 PTEN 40 HepG2 48 qRTPCR m08 89024 PTEN-37 0.81216946 0.03832362 PTEN 40 HepG2 48 qRTPCR m09 80510 PTEN-38 1.17120221 0.07105324 PTEN 40 HepG2 48 qRTPCR m02 80568 PTEN-39 0.73651641 0.04205119 PTEN 40 HepG2 48 qRTPCR m08 89025 PTEN-40 0.77040957 0.09600221 PTEN 40 HepG2 48 qRTPCR m09 Ctrl Lipo 1.00879958 0.02091684 PTEN 0 HepG2 48 qRTPCR Ctrl Un 1.00106773 0.03209554 PTEN 0 HepG2 48 qRTPCR Ctrl Un 1.65645803 0.08223117 PTEN 20 HepG2 qRTPCR Ctrl Lipo 1 0.0625741 PTEN 20 HepG2 qRTPCR 89028 GAPDH- 1.40901721 0.23907675 PTEN 20 HepG2 qRTPCR 01 m08 89008 PTEN-01 3.43224872 0.07716663 PTEN 20 HepG2 qRTPCR m02 89009 PTEN-02 2.09592711 0.16243777 PTEN 20 HepG2 qRTPCR m02 89010 PTEN-03 2.15970541 0.33072241 PTEN 20 HepG2 qRTPCR m02 89011 PTEN-04 2.3639332 0.23754811 PTEN 20 HepG2 qRTPCR m02 1531 PTEN-05 4.10242075 0.17894507 PTEN 20 HepG2 qRTPCR m02 2270 PTEN-06 3.23679979 0.07701882 PTEN 20 HepG2 qRTPCR m02 2219 PTEN-07 2.33892714 0.20169914 PTEN 20 HepG2 qRTPCR m02 3435 PTEN-08 3.93340293 0.32688117 PTEN 20 HepG2 qRTPCR m02 3385 PTEN-09 2.93871964 0.51981065 PTEN 20 HepG2 qRTPCR m02 4787 PTEN-10 2.53830236 0.04477097 PTEN 20 HepG2 qRTPCR m02 4757 PTEN-11 3.31639241 0.03907423 PTEN 20 HepG2 qRTPCR m02 24934 PTEN-12 4.74754352 0.22858809 PTEN 20 HepG2 qRTPCR m02 24915 PTEN-13 2.31287765 0.27951483 PTEN 20 HepG2 qRTPCR m02 39332 PTEN-14 1.87074326 0.28233818 PTEN 20 HepG2 qRTPCR m02 39286 PTEN-15 3.41222685 0.52388625 PTEN 20 HepG2 qRTPCR m02 41316 PTEN-16 4.17382777 0.34816317 PTEN 20 HepG2 qRTPCR m02 41283 PTEN-17 1.49894273 0.03658693 PTEN 20 HepG2 qRTPCR m02 89012 PTEN-18 2.79164014 0.22045151 PTEN 20 HepG2 qRTPCR m02 89013 PTEN-19 2.68966091 0.12130118 PTEN 20 HepG2 qRTPCR m02 89014 PTEN-20 2.02468662 0.05148674 PTEN 20 HepG2 qRTPCR m02 89015 PTEN-21 4.00653101 0.18846349 PTEN 20 HepG2 qRTPCR m02 51816 PTEN-22 2.34910348 0.32012534 PTEN 20 HepG2 qRTPCR m02 61111 PTEN-23 4.62417922 0.41016463 PTEN 20 HepG2 qRTPCR m02 61047 PTEN-24 3.23516092 0.39009138 PTEN 20 HepG2 qRTPCR m02 89016 PTEN-25 1.16790147 0.0728727 PTEN 20 HepG2 qRTPCR m02 89017 PTEN-26 3.35021013 0.38003317 PTEN 20 HepG2 qRTPCR m02 89018 PTEN-27 6.60978121 0.78898907 PTEN 20 HepG2 qRTPCR m02 89019 PTEN-28 4.31227054 0.27580702 PTEN 20 HepG2 qRTPCR m02 74236 PTEN-29 2.74964136 0.10743023 PTEN 20 HepG2 qRTPCR m02 74236 PTEN-29 0.24049945 0.08859417 PTEN 20 HepG2 qRTPCR m08 89020 PTEN-31 0.91441952 0.01811418 PTEN 20 HepG2 qRTPCR m09 76350 PTEN-32 0.58526953 0.0553571 PTEN 20 HepG2 qRTPCR m02 76389 PTEN-33 0.70221711 0.04445999 PTEN 20 HepG2 qRTPCR m08 89021 PTEN-34 0.90221361 0.0100545 PTEN 20 HepG2 qRTPCR m09 89022 PTEN-35 1.65985875 0.03672742 PTEN 20 HepG2 qRTPCR m02 89023 PTEN-36 0.2023577 0.00285569 PTEN 20 HepG2 qRTPCR m08 89024 PTEN-37 0.84843097 0.11695596 PTEN 20 HepG2 qRTPCR m09 80510 PTEN-38 1.26215458 0.06420006 PTEN 20 HepG2 qRTPCR m02 80568 PTEN-39 1.08500366 0.02327048 PTEN 20 HepG2 qRTPCR m08 89025 PTEN-40 1.00469214 0.06007095 PTEN 20 HepG2 qRTPCR m09 Ctrl Lipo 1 0.02091684 PTEN 20 HepG2 qRTPCR Ctrl Un 0.99233559 0.03209554 PTEN 20 HepG2 qRTPCR Ctrl Un 1.65645803 0.08223117 PTEN 50 HepG2 qRTPCR Ctrl Lipo 1 0.0625741 PTEN 50 HepG2 qRTPCR 89028 GAPDH- 0.88123629 0.20011246 PTEN 50 HepG2 qRTPCR 01 m08 89008 PTEN-01 1.93216822 0.27074957 PTEN 50 HepG2 qRTPCR m02 89009 PTEN-02 0.96431179 0.08602143 PTEN 50 HepG2 qRTPCR m02 89010 PTEN-03 0.95130526 0.1469602 PTEN 50 HepG2 qRTPCR m02 89011 PTEN-04 1.23357463 0.21933073 PTEN 50 HepG2 qRTPCR m02 1531 PTEN-05 1.81018905 0.25635873 PTEN 50 HepG2 qRTPCR m02 2270 PTEN-06 2.05071551 0.06291238 PTEN 50 HepG2 qRTPCR m02 2219 PTEN-07 1.64430951 0.09748897 PTEN 50 HepG2 qRTPCR m02 3435 PTEN-08 1.88853122 0.11760352 PTEN 50 HepG2 qRTPCR m02 3385 PTEN-09 1.3135341 0.0643118 PTEN 50 HepG2 qRTPCR m02 4787 PTEN-10 1.50503314 0.09807166 PTEN 50 HepG2 qRTPCR m02 4757 PTEN-11 2.14027771 0.10511705 PTEN 50 HepG2 qRTPCR m02 24934 PTEN-12 2.61157889 0.1204557 PTEN 50 HepG2 qRTPCR m02 24915 PTEN-13 1.47850359 0.06086845 PTEN 50 HepG2 qRTPCR m02 39332 PTEN-14 0.87799423 0.04823343 PTEN 50 HepG2 qRTPCR m02 39286 PTEN-15 1.83290261 0.16465839 PTEN 50 HepG2 qRTPCR m02 41316 PTEN-16 2.7570404 0.22298241 PTEN 50 HepG2 qRTPCR m02 41283 PTEN-17 0.96950283 0.07173485 PTEN 50 HepG2 qRTPCR m02 89012 PTEN-18 1.476266 0.10026699 PTEN 50 HepG2 qRTPCR m02 89013 PTEN-19 1.83976692 0.1080962 PTEN 50 HepG2 qRTPCR m02 89014 PTEN-20 1.09528414 0.09468355 PTEN 50 HepG2 qRTPCR m02 89015 PTEN-21 2.68121434 0.5136251 PTEN 50 HepG2 qRTPCR m02 51816 PTEN-22 1.39192824 0.07213382 PTEN 50 HepG2 qRTPCR m02 61111 PTEN-23 2.65133301 0.37430621 PTEN 50 HepG2 qRTPCR m02 61047 PTEN-24 2.17996196 0.50246153 PTEN 50 HepG2 qRTPCR m02 89016 PTEN-25 0.81993601 0.0643317 PTEN 50 HepG2 qRTPCR m02 89017 PTEN-26 3.37301735 0.23998972 PTEN 50 HepG2 qRTPCR m02 89018 PTEN-27 4.75662849 0.42448096 PTEN 50 HepG2 qRTPCR m02 89019 PTEN-28 2.17770957 0.29901882 PTEN 50 HepG2 qRTPCR m02 74236 PTEN-29 1.44814622 0.04578777 PTEN 50 HepG2 qRTPCR m02 74236 PTEN-29 0.53707519 0.08996561 PTEN 50 HepG2 qRTPCR m08 89020 PTEN-31 0.78501198 0.02979202 PTEN 50 HepG2 qRTPCR m09 76350 PTEN-32 0.53854963 0.00958811 PTEN 50 HepG2 qRTPCR m02 76389 PTEN-33 0.7328308 0.08871459 PTEN 50 HepG2 qRTPCR m08 89021 PTEN-34 0.75490717 0.01629929 PTEN 50 HepG2 qRTPCR m09 89022 PTEN-35 1.51386932 0.05398883 PTEN 50 HepG2 qRTPCR m02 89023 PTEN-36 0.2845264 0.04288889 PTEN 50 HepG2 qRTPCR m08 89024 PTEN-37 0.80508505 0.03832362 PTEN 50 HepG2 qRTPCR m09 80510 PTEN-38 1.16098602 0.07105324 PTEN 50 HepG2 qRTPCR m02 80568 PTEN-39 0.73009191 0.04205119 PTEN 50 HepG2 qRTPCR m08 89025 PTEN-40 0.76368942 0.09600221 PTEN 50 HepG2 qRTPCR m09 Ctrl Lipo 1 0.02091684 PTEN 50 HepG2 qRTPCR Ctrl Un 0.99233559 0.03209554 PTEN 50 HepG2 qRTPCR Ctrl Un 1 0.04964277 PTEN 20 HepG2 qRTPCR Ctrl Lipo 0.60369776 0 PTEN 20 HepG2 qRTPCR 89028 GAP D H- 0.85062053 0.1443301 PTEN 20 HepG2 qRTPCR 01 m08 89008 PTEN-01 2.07204086 0.04658532 PTEN 20 HepG2 qRTPCR m02 89009 PTEN-02 1.2653065 0.09806331 PTEN 20 HepG2 qRTPCR m02 89010 PTEN-03 1.30380932 0.19965638 PTEN 20 HepG2 qRTPCR m02 89011 PTEN-04 1.42710117 0.14340726 PTEN 20 HepG2 qRTPCR m02 1531 PTEN-05 2.47662221 0.10802874 PTEN 20 HepG2 qRTPCR m02 2270 PTEN-06 1.95404878 0.04649609 PTEN 20 HepG2 qRTPCR m02 2219 PTEN-07 1.41200508 0.12176532 PTEN 20 HepG2 qRTPCR m02 3435 PTEN-08 2.37458653 0.19733743 PTEN 20 HepG2 qRTPCR m02 3385 PTEN-09 1.77409846 0.31380852 PTEN 20 HepG2 qRTPCR m02 4787 PTEN-10 1.53236745 0.02702814 PTEN 20 HepG2 qRTPCR m02 4757 PTEN-11 2.00209867 0.02358903 PTEN 20 HepG2 qRTPCR m02 24934 PTEN-12 2.86608139 0.13799812 PTEN 20 HepG2 qRTPCR m02 24915 PTEN-13 1.39627906 0.16874248 PTEN 20 HepG2 qRTPCR m02 39332 PTEN-14 1.12936351 0.17044692 PTEN 20 HepG2 qRTPCR m02 39286 PTEN-15 2.0599537 0.31626896 PTEN 20 HepG2 qRTPCR m02 41316 PTEN-16 2.51973047 0.21018532 PTEN 20 HepG2 qRTPCR m02 41283 PTEN-17 0.90490837 0.02208745 PTEN 20 HepG2 qRTPCR m02 89012 PTEN-18 1.6853069 0.13308608 PTEN 20 HepG2 qRTPCR m02 89013 PTEN-19 1.62374227 0.07322925 PTEN 20 HepG2 qRTPCR m02 89014 PTEN-20 1.22229878 0.03108243 PTEN 20 HepG2 qRTPCR m02 89015 PTEN-21 2.4187338 0.11377499 PTEN 20 HepG2 qRTPCR m02 51816 PTEN-22 1.41814851 0.19325895 PTEN 20 HepG2 qRTPCR m02 61111 PTEN-23 2.79160664 0.24761547 PTEN 20 HepG2 qRTPCR m02 61047 PTEN-24 1.9530594 0.23549729 PTEN 20 HepG2 qRTPCR m02 89016 PTEN-25 0.7050595 0.04399309 PTEN 20 HepG2 qRTPCR m02 89017 PTEN-26 2.02251435 0.22942517 PTEN 20 HepG2 qRTPCR m02 89018 PTEN-27 3.99031011 0.47631093 PTEN 20 HepG2 qRTPCR m02 89019 PTEN-28 2.60330806 0.16650408 PTEN 20 HepG2 qRTPCR m02 74236 PTEN-29 1.65995233 0.06485539 PTEN 20 HepG2 qRTPCR m02 74236 PTEN-29 0.14518898 0.0534841 PTEN 20 HepG2 qRTPCR m08 89020 PTEN-31 0.92148213 0.01825408 PTEN 20 HepG2 qRTPCR m09 76350 PTEN-32 0.58978992 0.05578465 PTEN 20 HepG2 qRTPCR m02 76389 PTEN-33 0.70764076 0.04480338 PTEN 20 HepG2 qRTPCR m08 89021 PTEN-34 0.90918195 0.01013216 PTEN 20 HepG2 qRTPCR m09 89022 PTEN-35 1.67267884 0.03701109 PTEN 20 HepG2 qRTPCR m02 89023 PTEN-36 0.20392063 0.00287774 PTEN 20 HepG2 qRTPCR m08 89024 PTEN-37 0.85498391 0.11785929 PTEN 20 HepG2 qRTPCR m09 80510 PTEN-38 1.27190297 0.06469592 PTEN 20 HepG2 qRTPCR m02 80568 PTEN-39 1.0933838 0.02345021 PTEN 20 HepG2 qRTPCR m08 89025 PTEN-40 1.01245199 0.06053492 PTEN 20 HepG2 qRTPCR m09 Ctrl Lipo 1.00772361 0.02107839 PTEN 20 HepG2 qRTPCR Ctrl Un 1 0.03234343 PTEN 20 HepG2 qRTPCR Ctrl Un 1 0.04964277 PTEN 20 HepG2 qRTPCR Ctrl Lipo 0.60369776 0.03777585 PTEN 20 HepG2 qRTPCR 89028 GAPDH- 0.53200038 0.12080745 PTEN 20 HepG2 qRTPCR 01 m08 89008 PTEN-01 1.16644562 0 PTEN 50 HepG2 qRTPCR m02 89009 PTEN-02 0.58215287 0.05193094 PTEN 50 HepG2 qRTPCR m02 89010 PTEN-03 0.57430085 0.08871955 PTEN 50 HepG2 qRTPCR m02 89011 PTEN-04 0.74470624 0.13240947 PTEN 50 HepG2 qRTPCR m02 1531 PTEN-05 1.09280707 0.15476319 PTEN 50 HepG2 qRTPCR m02 2270 PTEN-06 1.23801236 0.03798006 PTEN 50 HepG2 qRTPCR m02 2219 PTEN-07 0.99266597 0.05885387 PTEN 50 HepG2 qRTPCR m02 3435 PTEN-08 1.14010207 0.07099698 PTEN 50 HepG2 qRTPCR m02 3385 PTEN-09 0.79297759 0.03882489 PTEN 50 HepG2 qRTPCR m02 4787 PTEN-10 0.90858514 0.05920564 PTEN 50 HepG2 qRTPCR m02 4757 PTEN-11 1.29208086 0.06345893 PTEN 50 HepG2 qRTPCR m02 24934 PTEN-12 1.57660432 0.07271884 PTEN 50 HepG2 qRTPCR m02 24915 PTEN-13 0.89256931 0.03674615 PTEN 50 HepG2 qRTPCR m02 39332 PTEN-14 0.53004315 0.02911841 PTEN 50 HepG2 qRTPCR m02 39286 PTEN-15 1.1065192 0.0994039 PTEN 50 HepG2 qRTPCR m02 41316 PTEN-16 1.66441911 0.13461398 PTEN 50 HepG2 qRTPCR m02 41283 PTEN-17 0.58528669 0.04330617 PTEN 50 HepG2 qRTPCR m02 89012 PTEN-18 0.89121847 0.06053096 PTEN 50 HepG2 qRTPCR m02 89013 PTEN-19 1.11066317 0.06525743 PTEN 50 HepG2 qRTPCR m02 89014 PTEN-20 0.66122058 0.05716025 PTEN 50 HepG2 qRTPCR m02 89015 PTEN-21 1.61864309 0.31007432 PTEN 50 HepG2 qRTPCR m02 51816 PTEN-22 0.84030396 0.04354703 PTEN 50 HepG2 qRTPCR m02 61111 PTEN-23 1.6006038 0.22596782 PTEN 50 HepG2 qRTPCR m02 61047 PTEN-24 1.31603815 0.3033349 PTEN 50 HepG2 qRTPCR m02 89016 PTEN-25 0.49499353 0.03883691 PTEN 50 HepG2 qRTPCR m02 89017 PTEN-26 2.03628302 0.14488126 PTEN 50 HepG2 qRTPCR m02 89018 PTEN-27 2.87156596 0.25625821 PTEN 50 HepG2 qRTPCR m02 89019 PTEN-28 1.31467839 0.18051699 PTEN 50 HepG2 qRTPCR m02 74236 PTEN-29 0.87424263 0.02764197 PTEN 50 HepG2 qRTPCR m02 74236 PTEN-29 0.32423109 0.05431204 PTEN 50 HepG2 qRTPCR m08 89020 PTEN-31 0.7910751 0.03002212 PTEN 50 HepG2 qRTPCR m09 76350 PTEN-32 0.54270918 0.00966216 PTEN 50 HepG2 qRTPCR m02 76389 PTEN-33 0.7384909 0.08939978 PTEN 50 HepG2 qRTPCR m08 89021 PTEN-34 0.76073777 0.01642518 PTEN 50 HepG2 qRTPCR m09 89022 PTEN-35 1.52556185 0.05440582 PTEN 50 HepG2 qRTPCR m02 89023 PTEN-36 0.28672397 0.04322014 PTEN 50 HepG2 qRTPCR m08 89024 PTEN-37 0.81130321 0.03861962 PTEN 50 HepG2 qRTPCR m09 80510 PTEN-38 1.16995302 0.07160203 PTEN 50 HepG2 qRTPCR m02 80568 PTEN-39 0.73573085 0.04237598 PTEN 50 HepG2 qRTPCR m08 89025 PTEN-40 0.76958786 0.0967437 PTEN 50 HepG2 qRTPCR m09 Ctrl Lipo 1.00772361 0.02107839 PTEN 50 HepG2 qRTPCR Ctrl Un 1 0.03234343 PTEN 50 HepG2 qRTPCR 89009 PTEN-02 1.0982509 0.1586551 PTEN 30 HepG2 24 qRTPCR m02 89009 PTEN-02 0.99719324 0.05132647 PTEN 11 HepG2 24 qRTPCR m02 89009 PTEN-02 0.88589652 0.12645115 PTEN 3 HepG2 24 qRTPCR m02 89009 PTEN-02 1.2230848 0.06052544 PTEN 1 HepG2 24 qRTPCR m02 2270 PTEN-06 1.62728701 0.0451605 PTEN 30 HepG2 24 qRTPCR m02 2270 PTEN-06 1.76720502 0.10294151 PTEN 11 HepG2 24 qRTPCR m02 2270 PTEN-06 1.21745384 0.06668203 PTEN 3 HepG2 24 qRTPCR m02 2270 PTEN-06 1.40404264 0.09823707 PTEN 1 HepG2 24 qRTPCR m02 3435 PTEN-08 1.20540523 0.06145149 PTEN 30 HepG2 24 qRTPCR m02 3435 PTEN-08 1.22162236 0.12818637 PTEN 11 HepG2 24 qRTPCR m02 3435 PTEN-08 1.07655185 0.01829564 PTEN 3 HepG2 24 qRTPCR m02 3435 PTEN-08 1.22200493 0.03064369 PTEN 1 HepG2 24 qRTPCR m02 4757 PTEN-11 1.83239021 0.23862574 PTEN 30 HepG2 24 qRTPCR m02 4757 PTEN-11 1.45452274 0.06069463 PTEN 11 HepG2 24 qRTPCR m02 4757 PTEN-11 1.11924938 0.11721998 PTEN 3 HepG2 24 qRTPCR m02 4757 PTEN-11 1.24880457 0.06593657 PTEN 1 HepG2 24 qRTPCR m02 24934 PTEN-12 2.23991852 0.30124776 PTEN 30 HepG2 24 qRTPCR m02 24934 PTEN-12 1.50154797 0.15484213 PTEN 10 HepG2 24 qRTPCR m02 24934 PTEN-12 0.98072498 0.0611128 PTEN 3 HepG2 24 qRTPCR m02 24934 PTEN-12 0.81034647 0.04567827 PTEN 1 HepG2 24 qRTPCR m02 39332 PTEN-14 0.99514277 0.07636867 PTEN 30 HepG2 24 qRTPCR m02 39332 PTEN-14 0.97907289 0.01006397 PTEN 10 HepG2 24 qRTPCR m02 39332 PTEN-14 0.84459155 0.03335593 PTEN 3 HepG2 24 qRTPCR m02 39332 PTEN-14 0.88820806 0.02650809 PTEN 1 HepG2 24 qRTPCR m02 89012 PTEN-18 1.49952932 0.03578299 PTEN 30 HepG2 24 qRTPCR m02 89012 PTEN-18 1.34422924 0.07018228 PTEN 10 HepG2 24 qRTPCR m02 89012 PTEN-18 1.00497711 0.01061478 PTEN 3 HepG2 24 qRTPCR m02 89012 PTEN-18 0.92278419 0.03476822 PTEN 1 HepG2 24 qRTPCR m02 89014 PTEN-20 1.51345667 0.09728243 PTEN 30 HepG2 24 qRTPCR m02 89014 PTEN-20 1.3863721 0.04205612 PTEN 10 HepG2 24 qRTPCR m02 89014 PTEN-20 0.89557657 0.01105855 PTEN 3 HepG2 24 qRTPCR m02 89014 PTEN-20 0.86194444 0.0364247 PTEN 1 HepG2 24 qRTPCR m02 89015 PTEN-21 1.30538318 0.16314638 PTEN 30 HepG2 24 qRTPCR m02 89015 PTEN-21 1.18062371 0.09732135 PTEN 21 HepG2 24 qRTPCR m02 89015 PTEN-21 0.97040661 0.06963223 PTEN 3 HepG2 24 qRTPCR m02 89015 PTEN-21 1.0278295 0.03699383 PTEN 1 HepG2 24 qRTPCR m02 61047 PTEN-24 0.99204407 0.17988926 PTEN 30 HepG2 24 qRTPCR m02 61047 PTEN-24 1.1180164 0.04440793 PTEN 10 HepG2 24 qRTPCR m02 61047 PTEN-24 0.99799219 0.02293249 PTEN 3 HepG2 24 qRTPCR m02 61047 PTEN-24 1.01719516 0.08656623 PTEN 1 HepG2 24 qRTPCR m02 89017 PTEN-26 1.5379591 0.06571744 PTEN 30 HepG2 24 qRTPCR m02 89017 PTEN-26 1.26911916 0.08909136 PTEN 26 HepG2 24 qRTPCR m02 89017 PTEN-26 0.97204718 0.04196938 PTEN 3 HepG2 24 qRTPCR m02 89017 PTEN-26 1.06410638 0.10576526 PTEN 1 HepG2 24 qRTPCR m02 74236 PTEN-29 0.82482925 0.13273844 PTEN 30 HepG2 24 qRTPCR m02 74236 PTEN-29 0.91107691 0.01926194 PTEN 10 HepG2 24 qRTPCR m02 74236 PTEN-29 0.98053985 0.08594844 PTEN 3 HepG2 24 qRTPCR m02 74236 PTEN-29 0.9651474 0.03931144 PTEN 1 HepG2 24 qRTPCR m02 80510 PTEN-38 1.25307314 0.07084655 PTEN 30 HepG2 24 qRTPCR m02 80510 PTEN-38 1.28169767 0.02097112 PTEN 38 HepG2 24 qRTPCR m02 80510 PTEN-38 1.00537715 0.04083891 PTEN 3 HepG2 24 qRTPCR m02 80510 PTEN-38 1.0492189 0.0349326 PTEN 1 HepG2 24 qRTPCR m02 89026 EP0-24 0.86760378 0.03265872 PTEN 30 HepG2 24 qRTPCR m02 89026 EP0-24 0.81482346 0.08728095 PTEN 10 HepG2 24 qRTPCR m02 89026 EP0-24 1.06392969 0.05303057 PTEN 3 HepG2 24 qRTPCR m02 89026 EP0-24 0.7805751 0.0305135 PTEN 1 HepG2 24 qRTPCR m02 89027 EP0-26 1.33551385 0.05349752 PTEN 30 HepG2 24 qRTPCR m02 89027 EP0-26 1.22390414 0.03938204 PTEN 10 HepG2 24 qRTPCR m02 89027 EP0-26 1.02694941 0.00480371 PTEN 3 HepG2 24 qRTPCR m02 89027 EP0-26 1.01459505 0.08741608 PTEN 1 HepG2 24 qRTPCR m02 Ctrl Lipo 1.00462922 0.06037335 PTEN 0 HepG2 24 qRTPCR Ctrl Un 0.88071848 0.12784742 PTEN 0 HepG2 24 qRTPCR 89009 PTEN-02 1.46477803 0.7474237 PTEN 30 HepG2 48 qRTPCR m02 89009 PTEN-02 1.01137021 0.16132825 PTEN 11 HepG2 48 qRTPCR m02 89009 PTEN-02 0.81310277 0.06880307 PTEN 3 HepG2 48 qRTPCR m02 89009 PTEN-02 0.8486586 0.01849678 PTEN 1 HepG2 48 qRTPCR m02 2270 PTEN-06 2.85710097 0.35776687 PTEN 30 HepG2 48 qRTPCR m02 2270 PTEN-06 1.18875887 0.03783696 PTEN 11 HepG2 48 qRTPCR m02 2270 PTEN-06 0.95449277 0.0583779 PTEN 3 HepG2 48 qRTPCR m02 2270 PTEN-06 0.96211099 0.04721487 PTEN 1 HepG2 48 qRTPCR m02 3435 PTEN-08 1.88035523 0.18243256 PTEN 30 HepG2 48 qRTPCR m02 3435 PTEN-08 1.49020931 0.20520954 PTEN 11 HepG2 48 qRTPCR m02 3435 PTEN-08 0.85554216 0.00592182 PTEN 3 HepG2 48 qRTPCR m02 3435 PTEN-08 0.96517098 0.04200204 PTEN 1 HepG2 48 qRTPCR m02 4757 PTEN-11 3.22705308 0.6903216 PTEN 30 HepG2 48 qRTPCR m02 4757 PTEN-11 1.42835425 0.02553456 PTEN 11 HepG2 48 qRTPCR m02 4757 PTEN-11 1.04751998 0.05158269 PTEN 3 HepG2 48 qRTPCR m02 4757 PTEN-11 0.89693723 0.02115135 PTEN 1 HepG2 48 qRTPCR m02 24934 PTEN-12 4.13121569 0.35536819 PTEN 30 HepG2 48 qRTPCR m02 24934 PTEN-12 2.07585312 0.23260644 PTEN 10 HepG2 48 qRTPCR m02 24934 PTEN-12 0.8531069 0.03670898 PTEN 3 HepG2 48 qRTPCR m02 24934 PTEN-12 0.97079745 0.04386586 PTEN 1 HepG2 48 qRTPCR m02 39332 PTEN-14 1.08646801 0.12188481 PTEN 30 HepG2 48 qRTPCR m02 39332 PTEN-14 0.94777822 0.07122232 PTEN 10 HepG2 48 qRTPCR m02 39332 PTEN-14 0.87325546 0.01209211 PTEN 3 HepG2 48 qRTPCR m02 39332 PTEN-14 1.02829335 0.03677628 PTEN 1 HepG2 48 qRTPCR m02 89012 PTEN-18 1.6596831 0.0716892 PTEN 30 HepG2 48 qRTPCR m02 89012 PTEN-18 1.11386544 0.0075925 PTEN 10 HepG2 48 qRTPCR m02 89012 PTEN-18 0.82274509 0.06384491 PTEN 3 HepG2 48 qRTPCR m02 89012 PTEN-18 0.98683131 0.01512816 PTEN 1 HepG2 48 qRTPCR m02 89014 PTEN-20 2.12211892 0.09010447 PTEN 30 HepG2 48 qRTPCR m02 89014 PTEN-20 1.30781117 0.12046862 PTEN 10 HepG2 48 qRTPCR m02 89014 PTEN-20 0.94736486 0.09664968 PTEN 3 HepG2 48 qRTPCR m02 89014 PTEN-20 1.10803154 0.14710099 PTEN 1 HepG2 48 qRTPCR m02 89015 PTEN-21 1.61396358 0.04820963 PTEN 30 HepG2 48 qRTPCR m02 89015 PTEN-21 1.51129517 0.02945828 PTEN 21 HepG2 48 qRTPCR m02 89015 PTEN-21 1.16458905 0.0729312 PTEN 3 HepG2 48 qRTPCR m02 89015 PTEN-21 1.1654895 0.04826152 PTEN 1 HepG2 48 qRTPCR m02 61047 PTEN-24 1.64326629 0.06246528 PTEN 30 HepG2 48 qRTPCR m02 61047 PTEN-24 1.85353816 0.09219538 PTEN 10 HepG2 48 qRTPCR m02 61047 PTEN-24 1.23903878 0.07674058 PTEN 3 HepG2 48 qRTPCR m02 61047 PTEN-24 1.1174449 0.05886819 PTEN 1 HepG2 48 qRTPCR m02 89017 PTEN-26 2.01287105 0.141602 PTEN 30 HepG2 48 qRTPCR m02 89017 PTEN-26 1.61056721 0.04139243 PTEN 26 HepG2 48 qRTPCR m02 89017 PTEN-26 1.1545886 0.02124798 PTEN 3 HepG2 48 qRTPCR m02 89017 PTEN-26 0.95517578 0.01388491 PTEN 1 HepG2 48 qRTPCR m02 74236 PTEN-29 1.03846275 0.02923373 PTEN 30 HepG2 48 qRTPCR m02 74236 PTEN-29 1.02821907 0.04727622 PTEN 10 HepG2 48 qRTPCR m02 74236 PTEN-29 0.9190216 0.00144861 PTEN 3 HepG2 48 qRTPCR m02 74236 PTEN-29 0.92302254 0.03985553 PTEN 1 HepG2 48 qRTPCR m02 80510 PTEN-38 1.90042475 0.08465078 PTEN 30 HepG2 48 qRTPCR m02 80510 PTEN-38 1.36286581 0.08694025 PTEN 38 HepG2 48 qRTPCR m02 80510 PTEN-38 0.9684545 0.0800668 PTEN 3 HepG2 48 qRTPCR m02 80510 PTEN-38 0.91404889 0.0427886 PTEN 1 HepG2 48 qRTPCR m02 89026 EP0-24 0.99305557 0.03814135 PTEN 30 HepG2 48 qRTPCR m02 89026 EP0-24 0.77547435 0.04235052 PTEN 10 HepG2 48 qRTPCR m02 89026 EP0-24 0.85539995 0.07078874 PTEN 3 HepG2 48 qRTPCR m02 89026 EP0-24 0.87696025 0.08296927 PTEN 1 HepG2 48 qRTPCR m02 89027 EP0-26 2.01641558 0.09576255 PTEN 30 HepG2 48 qRTPCR m02 89027 EP0-26 1.22175384 0.04802197 PTEN 10 HepG2 48 qRTPCR m02 89027 EP0-26 1.16564668 0.11262306 PTEN 3 HepG2 48 qRTPCR m02 89027 EP0-26 0.82858321 0.02271264 PTEN 1 HepG2 48 qRTPCR m02 Ctrl Lipo 1.05767042 0.17116388 PTEN 0 HepG2 48 qRTPCR Ctrl Un 0.93915544 0.10892164 PTEN 0 HepG2 48 qRTPCR 89009 PTEN-02 0.97666252 0.1354761 PTEN 30 HepG2 72 qRTPCR m02 89009 PTEN-02 1.00752547 0.16426145 PTEN 11 HepG2 72 qRTPCR m02 89009 PTEN-02 0.81755697 0.03379991 PTEN 3 HepG2 72 qRTPCR m02 89009 PTEN-02 1.06992971 0.1605443 PTEN 1 HepG2 72 qRTPCR m02 2270 PTEN-06 3.41999891 0.16738836 PTEN 30 HepG2 72 qRTPCR m02 2270 PTEN-06 1.25174068 0.05649362 PTEN 11 HepG2 72 qRTPCR m02 2270 PTEN-06 1.00347552 0.04899899 PTEN 3 HepG2 72 qRTPCR m02 2270 PTEN-06 0.99356033 0.02091453 PTEN 1 HepG2 72 qRTPCR m02 3435 PTEN-08 1.65432855 0.0909187 PTEN 30 HepG2 72 qRTPCR m02 3435 PTEN-08 1.22845612 0.07200488 PTEN 11 HepG2 72 qRTPCR m02 3435 PTEN-08 0.97914285 0.05421504 PTEN 3 HepG2 72 qRTPCR m02 3435 PTEN-08 1.06312692 0.02153226 PTEN 1 HepG2 72 qRTPCR m02 4757 PTEN-11 3.97514163 0.49899891 PTEN 30 HepG2 72 qRTPCR m02 4757 PTEN-11 1.68168717 0.09937693 PTEN 11 HepG2 72 qRTPCR m02 4757 PTEN-11 1.18447354 0.06462689 PTEN 3 HepG2 72 qRTPCR m02 4757 PTEN-11 1.07739558 0.02987555 PTEN 1 HepG2 72 qRTPCR m02 24934 PTEN-12 2.88261149 0.40274864 PTEN 30 HepG2 72 qRTPCR m02 24934 PTEN-12 1.70370469 0.05618161 PTEN 10 HepG2 72 qRTPCR m02 24934 PTEN-12 1.08174308 0.04560774 PTEN 3 HepG2 72 qRTPCR m02 24934 PTEN-12 0.87362133 0.04721127 PTEN 1 HepG2 72 qRTPCR m02 39332 PTEN-14 1.14988278 0.04895403 PTEN 30 HepG2 72 qRTPCR m02 39332 PTEN-14 1.17750015 0.08452395 PTEN 10 HepG2 72 qRTPCR m02 39332 PTEN-14 1.05618608 0.06979462 PTEN 3 HepG2 72 qRTPCR m02 39332 PTEN-14 1.06198179 0.06585623 PTEN 1 HepG2 72 qRTPCR m02 89012 PTEN-18 1.40960515 0.16370331 PTEN 30 HepG2 72 qRTPCR m02 89012 PTEN-18 1.06542063 0.03893821 PTEN 10 HepG2 72 qRTPCR m02 89012 PTEN-18 1.02330293 0.05629308 PTEN 3 HepG2 72 qRTPCR m02 89012 PTEN-18 1.05102676 0.08030083 PTEN 1 HepG2 72 qRTPCR m02 89014 PTEN-20 1.62119779 0.31040535 PTEN 30 HepG2 72 qRTPCR m02 89014 PTEN-20 1.35467513 0.04732026 PTEN 10 HepG2 72 qRTPCR m02 89014 PTEN-20 1.08378636 0.03666093 PTEN 3 HepG2 72 qRTPCR m02 89014 PTEN-20 0.98424969 0.01637807 PTEN 1 HepG2 72 qRTPCR m02 89015 PTEN-21 1.46213006 0.00991718 PTEN 30 HepG2 72 qRTPCR m02 89015 PTEN-21 1.47920213 0.11756689 PTEN 21 HepG2 72 qRTPCR m02 89015 PTEN-21 0.87291673 0.01686106 PTEN 3 HepG2 72 qRTPCR m02 89015 PTEN-21 0.93910066 0.02767981 PTEN 1 HepG2 72 qRTPCR m02 61047 PTEN-24 1.80684086 0.06078274 PTEN 30 HepG2 72 qRTPCR m02 61047 PTEN-24 1.49732935 0.02362927 PTEN 10 HepG2 72 qRTPCR m02 61047 PTEN-24 0.86393564 0.20666007 PTEN 3 HepG2 72 qRTPCR m02 61047 PTEN-24 1.01127543 0.0107217 PTEN 1 HepG2 72 qRTPCR m02 89017 PTEN-26 2.68896605 0.15483944 PTEN 30 HepG2 72 qRTPCR m02 89017 PTEN-26 1.93845847 0.0784448 PTEN 26 HepG2 72 qRTPCR m02 89017 PTEN-26 1.08283373 0.0689543 PTEN 3 HepG2 72 qRTPCR m02 89017 PTEN-26 0.91349945 0.03111099 PTEN 1 HepG2 72 qRTPCR m02 74236 PTEN-29 1.49261841 0.05640001 PTEN 30 HepG2 72 qRTPCR m02 74236 PTEN-29 1.20535844 0.09496339 PTEN 10 HepG2 72 qRTPCR m02 74236 PTEN-29 0.8863063 0.03600426 PTEN 3 HepG2 72 qRTPCR m02 74236 PTEN-29 1.30911877 0.46191081 PTEN 1 HepG2 72 qRTPCR m02 80510 PTEN-38 4.42807942 0.49064121 PTEN 30 HepG2 72 qRTPCR m02 80510 PTEN-38 1.54553765 0.03440618 PTEN 38 HepG2 72 qRTPCR m02 80510 PTEN-38 1.03735148 0.02902325 PTEN 3 HepG2 72 qRTPCR m02 80510 PTEN-38 2.26315161 1.35763416 PTEN 1 HepG2 72 qRTPCR m02 89026 EP0-24 1.67875199 0.39539629 PTEN 30 HepG2 72 qRTPCR m02 89026 EP0-24 0.94781399 0.03075526 PTEN 10 HepG2 72 qRTPCR m02 89026 EP0-24 0.86477016 0.04224438 PTEN 3 HepG2 72 qRTPCR m02 89026 EP0-24 0.93871667 0.06867827 PTEN 1 HepG2 72 qRTPCR m02 89027 EP0-26 3.93004559 0.17623487 PTEN 30 HepG2 72 qRTPCR m02 89027 EP0-26 3.44769712 1.15554929 PTEN 10 HepG2 72 qRTPCR m02 89027 EP0-26 1.05783507 0.08519439 PTEN 3 HepG2 72 qRTPCR m02 89027 EP0-26 0.91829613 0.06244161 PTEN 1 HepG2 72 qRTPCR m02 Ctrl Lipo 1.03812723 0.13640407 PTEN 0 HepG2 72 qRTPCR Ctrl Un 0.93786818 0.04603847 PTEN 0 HepG2 72 qRTPCR 89009 PTEN-02 1.00192323 0.06384049 PTEN 10 Hepa1-6 qRTPCR m02 2270 PTEN-06 0.98616635 0.0176667 PTEN 10 Hepa1-6 qRTPCR m02 3435 PTEN-08 1.05746468 0.05531259 PTEN 10 Hepa1-6 qRTPCR m02 4757 PTEN-11 1.01204996 0.01092563 PTEN 10 Hepa1-6 qRTPCR m02 24934 PTEN-12 1.07632948 0.04574082 PTEN 10 Hepa1-6 qRTPCR m02 39332 PTEN-14 1.06518352 0.02811564 PTEN 10 Hepa1-6 qRTPCR m02 89012 PTEN-18 1.01395632 0.04020887 PTEN 10 Hepa1-6 qRTPCR m02 89014 PTEN-20 1.0950544 0.01366641 PTEN 10 Hepa1-6 qRTPCR m02 89015 PTEN-21 1.06581741 0.04496326 PTEN 10 Hepa1-6 qRTPCR m02 61047 PTEN-24 1.12352649 0.022694 PTEN 10 Hepa1-6 qRTPCR m02 89017 PTEN-26 1.14241583 0.0166511 PTEN 10 Hepa1-6 qRTPCR m02 74236 PTEN-29 1.05573041 0.02490786 PTEN 10 Hepa1-6 qRTPCR m02 80510 PTEN-38 1.40021393 0.34360751 PTEN 10 Hepa1-6 qRTPCR m02 89028 GAPDH- 1.22881095 0.06666012 PTEN 10 Hepa1-6 qRTPCR 01 m08 Ctrl Lipo 1 0.01959829 PTEN 10 Hepa1-6 qRTPCR Ctrl Un 1.04030087 0.04129801 PTEN 10 Hepa1-6 qRTPCR 89009 PTEN-02 1.14814831 0.03320934 PTEN 30 Hepa1-6 qRTPCR m02 2270 PTEN-06 1.10962206 0.02297176 PTEN 30 Hepa1-6 qRTPCR m02 3435 PTEN-08 1.19030608 0.02929796 PTEN 30 Hepa1-6 qRTPCR m02 4757 PTEN-11 1.24683225 0.02635534 PTEN 30 Hepa1-6 qRTPCR m02 24934 PTEN-12 1.09813989 0.01545405 PTEN 30 Hepa1-6 qRTPCR m02 39332 PTEN-14 1.0326915 0.01490324 PTEN 30 Hepa1-6 qRTPCR m02 89012 PTEN-18 1.2319987 0.03616069 PTEN 30 Hepa1-6 qRTPCR m02 89014 PTEN-20 1.40570267 0.25549233 PTEN 30 Hepa1-6 qRTPCR m02 89015 PTEN-21 1.41997346 0.03262106 PTEN 30 Hepa1-6 qRTPCR m02 61047 PTEN-24 1.41997346 0.03262106 PTEN 30 Hepa1-6 qRTPCR m02 89017 PTEN-26 1.24007256 0.05638453 PTEN 30 Hepa1-6 qRTPCR m02 74236 PTEN-29 1.3398242 0.07400006 PTEN 30 Hepa1-6 qRTPCR m02 80510 PTEN-38 1.22733667 0.03394197 PTEN 30 Hepa1-6 qRTPCR m02 89028 GAPDH- 1.56542122 0.06355372 PTEN 30 Hepa1-6 qRTPCR 01 m08 Ctrl Lipo 1 0.01959829 PTEN 30 Hepa1-6 qRTPCR Ctrl Un 1.04030087 0.04129801 PTEN 30 Hepa1-6 qRTPCR 89009 PTEN-02 0.92360342 0.03349449 PTEN 60 Hep3B 48 qRTPCR m02 89009 PTEN-02 1.04834346 0.07896624 PTEN 30 Hep3B 48 qRTPCR m02 4757 PTEN-11 1.17881248 0.05266207 PTEN 30 Hep3B 48 qRTPCR m02 24934 PTEN-12 1.13241756 0.13049124 PTEN 30 Hep3B 48 qRTPCR m02 89014 PTEN-20 0.86968245 0.0572627 PTEN 30 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.26286894 0.15728533 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.01454439 0.11885369 PTEN 30 Hep3B 48 qRTPCR m02 4757 PTEN-11 1.31376172 0.03431848 PTEN 60 Hep3B 48 qRTPCR m02 4757 PTEN-11 1.38052137 0.10634841 PTEN 30 Hep3B 48 qRTPCR m02 24934 PTEN-12 1.71498482 0.06435312 PTEN 30 Hep3B 48 qRTPCR m02 89014 PTEN-20 1.27136187 0.07621645 PTEN 30 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.71179619 0.17139365 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.39108759 0.09886701 PTEN 30 Hep3B 48 qRTPCR m02 24934 PTEN-12 1.4911762 0.09105287 PTEN 60 Hep3B 48 qRTPCR m02 24934 PTEN-12 1.78085377 0.02210956 PTEN 30 Hep3B 48 qRTPCR m02 89014 PTEN-20 1.04259626 0.12867428 PTEN 30 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.76614857 0.22160492 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.60135694 0.16260323 PTEN 30 Hep3B 48 qRTPCR m02 89014 PTEN-20 0.99701322 0.06922262 PTEN 60 Hep3B 48 qRTPCR m02 89014 PTEN-20 1.3725978 0.14495239 PTEN 30 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.32337927 0.0951828 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.30741505 0.0593633 PTEN 30 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.43597449 0.02228448 PTEN 60 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.72085864 0.06859071 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.45978871 0.09850196 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.4349891 0.1194869 PTEN 60 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.55835987 0.04645892 PTEN 30 Hep3B 48 qRTPCR m02 Ctrl Lipo 1.02542727 0.10278592 PTEN 0 Hep3B 48 qRTPCR Ctrl Un 1.01549182 0.04571984 PTEN 0 Hep3B 48 qRTPCR 89008 PTEN-01 0.97978589 0.07413196 PTEN 30 Hep3B 48 qRTPCR m02 89009 PTEN-02 1.06663909 0.11957983 PTEN 30 Hep3B 48 qRTPCR m02 89010 PTEN-03 1.4259353 0.12798011 PTEN 30 Hep3B 48 qRTPCR m02 89011 PTEN-04 1.35604316 0.04210534 PTEN 30 Hep3B 48 qRTPCR m02 1531 PTEN-05 1.40591605 0.10318003 PTEN 30 Hep3B 48 qRTPCR m02 2270 PTEN-06 1.28264515 0.10187842 PTEN 30 Hep3B 48 qRTPCR m02 2219 PTEN-07 1.19295416 0.09040707 PTEN 30 Hep3B 48 qRTPCR m02 3435 PTEN-08 1.13031934 0.24329104 PTEN 30 Hep3B 48 qRTPCR m02 3385 PTEN-09 1.17249987 0.31262063 PTEN 30 Hep3B 48 qRTPCR m02 4787 PTEN-10 1.30534932 0.24048396 PTEN 30 Hep3B 48 qRTPCR m02 4757 PTEN-11 1.16030594 0.15168937 PTEN 30 Hep3B 48 qRTPCR m02 24934 PTEN-12 1.00762685 0.17820605 PTEN 30 Hep3B 48 qRTPCR m02 24915 PTEN-13 1.05469305 0.03726579 PTEN 30 Hep3B 48 qRTPCR m02 39332 PTEN-14 1.21390707 0.05560444 PTEN 30 Hep3B 48 qRTPCR m02 39286 PTEN-15 1.32131413 0.08109832 PTEN 30 Hep3B 48 qRTPCR m02 41316 PTEN-16 1.06944172 0.09841118 PTEN 30 Hep3B 48 qRTPCR m02 41283 PTEN-17 1.72152287 0.0267616 PTEN 30 Hep3B 48 qRTPCR m02 89012 PTEN-18 1.29045757 0.12325518 PTEN 30 Hep3B 48 qRTPCR m02 89013 PTEN-19 1.08112434 0.04754823 PTEN 30 Hep3B 48 qRTPCR m02 89014 PTEN-20 1.38134312 0.05598906 PTEN 30 Hep3B 48 qRTPCR m02 89015 PTEN-21 1.67846148 0.13152567 PTEN 30 Hep3B 48 qRTPCR m02 51816 PTEN-22 1.50369396 0.0657247 PTEN 30 Hep3B 48 qRTPCR m02 61111 PTEN-23 1.43381392 0.08413907 PTEN 30 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.26542716 0.04216795 PTEN 30 Hep3B 48 qRTPCR m02 89016 PTEN-25 1.44528983 0.00607422 PTEN 30 Hep3B 48 qRTPCR m02 89017 PTEN-26 1.9061656 0.14732026 PTEN 30 Hep3B 48 qRTPCR m02 89018 PTEN-27 0.96727622 0.07488091 PTEN 30 Hep3B 48 qRTPCR m02 89019 PTEN-28 1.26936613 0.02232618 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.1752558 0.07292346 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.15035798 0.02630625 PTEN 30 Hep3B 48 qRTPCR m08 Ctrl Un 1.02306739 0.06109769 PTEN 0 Hep3B 48 qRTPCR Ctrl Lipo 1.0003564 0.01898647 PTEN 0 Hep3B 48 qRTPCR 89008 PTEN-01 0.92043686 0.03752159 PTEN 10 Hep3B 48 qRTPCR m02 89009 PTEN-02 1.21754828 0.10735102 PTEN 10 Hep3B 48 qRTPCR m02 89010 PTEN-03 1.45133911 0.06747642 PTEN 10 Hep3B 48 qRTPCR m02 89011 PTEN-04 1.28473538 0.0779697 PTEN 10 Hep3B 48 qRTPCR m02 1531 PTEN-05 1.49921065 0.0701304 PTEN 10 Hep3B 48 qRTPCR m02 2270 PTEN-06 1.33980352 0.09599047 PTEN 10 Hep3B 48 qRTPCR m02 2219 PTEN-07 1.16777521 0.07720115 PTEN 10 Hep3B 48 qRTPCR m02 3435 PTEN-08 1.12689576 0.24130018 PTEN 10 Hep3B 48 qRTPCR m02 3385 PTEN-09 1.05940742 0.25562672 PTEN 10 Hep3B 48 qRTPCR m02 4787 PTEN-10 1.22747037 0.20038013 PTEN 10 Hep3B 48 qRTPCR m02 4757 PTEN-11 1.03856807 0.12350597 PTEN 10 Hep3B 48 qRTPCR m02 24934 PTEN-12 1.03006371 0.19607521 PTEN 10 Hep3B 48 qRTPCR m02 24915 PTEN-13 1.27504716 0.02479226 PTEN 10 Hep3B 48 qRTPCR m02 39332 PTEN-14 1.24085106 0.04932634 PTEN 10 Hep3B 48 qRTPCR m02 39286 PTEN-15 1.04257666 0.029586 PTEN 10 Hep3B 48 qRTPCR m02 41316 PTEN-16 1.68241978 0.07559047 PTEN 10 Hep3B 48 qRTPCR m02 41283 PTEN-17 1.28249736 0.0267581 PTEN 10 Hep3B 48 qRTPCR m02 89012 PTEN-18 1.07746042 0.02797078 PTEN 10 Hep3B 48 qRTPCR m02 89013 PTEN-19 1.45541497 0.10222415 PTEN 10 Hep3B 48 qRTPCR m02 89014 PTEN-20 1.54825801 0.07879196 PTEN 10 Hep3B 48 qRTPCR m02 89015 PTEN-21 1.67890365 0.06594263 PTEN 10 Hep3B 48 qRTPCR m02 51816 PTEN-22 1.54053623 0.18233703 PTEN 10 Hep3B 48 qRTPCR m02 61111 PTEN-23 1.38494224 0.03292358 PTEN 10 Hep3B 48 qRTPCR m02 61047 PTEN-24 1.29367045 0.03064696 PTEN 10 Hep3B 48 qRTPCR m02 89016 PTEN-25 1.26920881 0.04947473 PTEN 10 Hep3B 48 qRTPCR m02 89017 PTEN-26 1.63378684 0.06378599 PTEN 10 Hep3B 48 qRTPCR m02 89018 PTEN-27 1.06068076 0.03216688 PTEN 10 Hep3B 48 qRTPCR m02 89019 PTEN-28 1.28451012 0.07798072 PTEN 10 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.21981924 0.03228177 PTEN 10 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.23666534 0.08419671 PTEN 10 Hep3B 48 qRTPCR m08 Ctrl Un 1.04012555 0.05867931 PTEN 0 Hep3B 48 qRTPCR Ctrl Lipo 1.00223105 0.04756608 PTEN 0 Hep3B 48 qRTPCR 89008 PTEN-01 1.1137004 0.0931079 PTEN 10 Hepa 1- 48 qRTPCR m02 6 89009 PTEN-02 1.0035978 0.02812044 PTEN 10 Hepa 1- 48 qRTPCR m02 6 89010 PTEN-03 1.05192516 0.0703927 PTEN 10 Hepa 1- 48 qRTPCR m02 6 4787 PTEN-10 1.08530622 0.00902527 PTEN 10 Hepa 1- 48 qRTPCR m02 6 4757 PTEN-11 0.9557331 0.00283882 PTEN 10 Hepa 1- 48 qRTPCR m02 6 24934 PTEN-12 1.08964401 0.04984101 PTEN 10 Hepa 1- 48 qRTPCR m02 6 39286 PTEN-15 0.97259979 0.02440388 PTEN 10 Hepa 1- 48 qRTPCR m02 6 41316 PTEN-16 1.0365827 0.04750994 PTEN 10 Hepa 1- 48 qRTPCR m02 6 89012 PTEN-18 0.85087168 0.0025735 PTEN 10 Hepa 1- 48 qRTPCR m02 6 89014 PTEN-20 0.93102279 0.05061869 PTEN 10 Hepa 1- 48 qRTPCR m02 6 89015 PTEN-21 1.16902374 0.0429716 PTEN 10 Hepa 1- 48 qRTPCR m02 6 89017 PTEN-26 1.0293176 0.0184284 PTEN 10 Hepa 1- 48 qRTPCR m02 6 Ctrl Un 0.84552636 0.01109569 PTEN 0 Hepa 1- 48 qRTPCR 6 Ctrl Lipo 1.01139402 0.10962385 PTEN 0 Hepa 1- 48 qRTPCR 6 89008 PTEN-01 1.37435346 0.02323858 PTEN 30 Hepa 1- 48 qRTPCR m02 6 89009 PTEN-02 1.12987697 0.03603001 PTEN 30 Hepa 1- 48 qRTPCR m02 6 89010 PTEN-03 1.28804849 0.05734154 PTEN 30 Hepa 1- 48 qRTPCR m02 6 4787 PTEN-10 1.30510831 0.08103648 PTEN 30 Hepa 1- 48 qRTPCR m02 6 4757 PTEN-11 1.12166013 0.05363097 PTEN 30 Hepa 1- 48 qRTPCR m02 6 24934 PTEN-12 1.33108042 0.07811614 PTEN 30 Hepa 1- 48 qRTPCR m02 6 39286 PTEN-15 1.01185682 0.00189352 PTEN 30 Hepa 1- 48 qRTPCR m02 6 41316 PTEN-16 1.16866925 0.02809223 PTEN 30 Hepa 1- 48 qRTPCR m02 6 89012 PTEN-18 0.89133594 0.03029202 PTEN 30 Hepa 1- 48 qRTPCR m02 6 89014 PTEN-20 1.03423232 0.0202734 PTEN 30 Hepa 1- 48 qRTPCR m02 6 89015 PTEN-21 1.29714156 0.02402855 PTEN 30 Hepa 1- 48 qRTPCR m02 6 89017 PTEN-26 1.15902681 0.05021543 PTEN 30 Hepa 1- 48 qRTPCR m02 6 Ctrl Un 0.84552636 0.01109569 PTEN 0 Hepa 1- 48 qRTPCR 6 Ctrl Lipo 1.01139402 0.10962385 PTEN 0 Hepa 1- 48 qRTPCR 6 89008 PTEN-01 0.86285661 0.05510382 PTEN 30 Hep3B 48 qRTPCR m02 89009 PTEN-02 0.72230437 0.04148145 PTEN 30 Hep3B 48 qRTPCR m02 89010 PTEN-03 0.9712617 0.05943612 PTEN 30 Hep3B 48 qRTPCR m02 89011 PTEN-04 1.63103 0.16131455 PTEN 30 Hep3B 48 qRTPCR m02 1531 PTEN-05 12.5867884 3.69478325 PTEN 30 Hep3B 48 qRTPCR m02 2270 PTEN-06 14.7667628 3.39064883 PTEN 30 Hep3B 48 qRTPCR m02 2219 PTEN-07 1.40708516 2.59883266 PTEN 30 Hep3B 48 qRTPCR m02 3435 PTEN-08 0.9471562 1.60845526 PTEN 30 Hep3B 48 qRTPCR m02 3385 PTEN-09 0.81907938 1.36136205 PTEN 30 Hep3B 48 qRTPCR m02 4787 PTEN-10 0.89187466 2.26205371 PTEN 30 Hep3B 48 qRTPCR m02 4757 PTEN-11 2.31852915 1.96994502 PTEN 30 Hep3B 48 qRTPCR m02 24934 PTEN-12 17.3869845 13.4332744 PTEN 30 Hep3B 48 qRTPCR m02 24915 PTEN-13 0.61071708 0.05126922 PTEN 30 Hep3B 48 qRTPCR m02 39332 PTEN-14 0.85673537 0.18563565 PTEN 30 Hep3B 48 qRTPCR m02 39286 PTEN-15 1.27622982 0.18613699 PTEN 30 Hep3B 48 qRTPCR m02 41316 PTEN-16 3.58483495 1.44558974 PTEN 30 Hep3B 48 qRTPCR m02 41283 PTEN-17 10.9556451 1.18019211 PTEN 30 Hep3B 48 qRTPCR m02 89012 PTEN-18 9.36666671 6.85482901 PTEN 30 Hep3B 48 qRTPCR m02 89013 PTEN-19 0.83633443 0.05438837 PTEN 30 Hep3B 48 qRTPCR m02 89014 PTEN-20 0.88713052 0.0783516 PTEN 30 Hep3B 48 qRTPCR m02 89015 PTEN-21 1.40307095 0.04531143 PTEN 30 Hep3B 48 qRTPCR m02 51816 PTEN-22 3.43364668 0.7915353 PTEN 30 Hep3B 48 qRTPCR m02 61111 PTEN-23 17.7646203 6.94603845 PTEN 30 Hep3B 48 qRTPCR m02 61047 PTEN-24 6.28877419 1.5223077 PTEN 30 Hep3B 48 qRTPCR m02 89016 PTEN-25 1.8032164 1.06260753 PTEN 30 Hep3B 48 qRTPCR m02 89017 PTEN-26 1.43011915 0.10624378 PTEN 30 Hep3B 48 qRTPCR m02 89018 PTEN-27 1.58157067 0.10623726 PTEN 30 Hep3B 48 qRTPCR m02 89019 PTEN-28 2.08807696 0.30247562 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 8.31569114 3.41551951 PTEN 30 Hep3B 48 qRTPCR m02 74236 PTEN-29 9.18788254 3.57067981 PTEN 30 Hep3B 48 qRTPCR m08 89024 PTEN-37 0.33231411 0.03482309 PTEN 30 Hep3B 48 qRTPCR m09 80510 PTEN-38 0.13553843 0.1252565 PTEN 30 Hep3B 48 qRTPCR m02 80568 PTEN-39 0.53521351 0.21978072 PTEN 30 Hep3B 48 qRTPCR m08 89025 PTEN-40 0.37926266 0.14463753 PTEN 30 Hep3B 48 qRTPCR m09 Ctrl Un 1.14804388 0.21533079 PTEN 0 Hep3B 48 qRTPCR Ctrl Lipo 1.03719306 0.19807141 PTEN 0 Hep3B 48 qRTPCR 89008 PTEN-01 2.05245662 0.20849317 PTEN 10 Hep3B 48 qRTPCR m02 89009 PTEN-02 4.6327993 0.60451206 PTEN 10 Hep3B 48 qRTPCR m02 89010 PTEN-03 5.43854888 1.15640189 PTEN 10 Hep3B 48 qRTPCR m02 89011 PTEN-04 3.17966472 0.47379274 PTEN 10 Hep3B 48 qRTPCR m02 1531 PTEN-05 3.5266118 1.66486019 PTEN 10 Hep3B 48 qRTPCR m02 2270 PTEN-06 1.35115222 0.06218687 PTEN 10 Hep3B 48 qRTPCR m02 2219 PTEN-07 1.60557273 0.24378354 PTEN 10 Hep3B 48 qRTPCR m02 3435 PTEN-08 3.10947058 0.70732608 PTEN 10 Hep3B 48 qRTPCR m02 3385 PTEN-09 3.03871076 0.22498395 PTEN 10 Hep3B 48 qRTPCR m02 4787 PTEN-10 2.2479158 0.37901219 PTEN 10 Hep3B 48 qRTPCR m02 4757 PTEN-11 1.21883105 0.07976438 PTEN 10 Hep3B 48 qRTPCR m02 24934 PTEN-12 1.14115249 0.02730918 PTEN 10 Hep3B 48 qRTPCR m02 24915 PTEN-13 1.69100252 0.99325225 PTEN 10 Hep3B 48 qRTPCR m02 39332 PTEN-14 3.36385824 1.36800003 PTEN 10 Hep3B 48 qRTPCR m02 39286 PTEN-15 2.84179964 0.74559864 PTEN 10 Hep3B 48 qRTPCR m02 41316 PTEN-16 1.88684418 0.03985459 PTEN 10 Hep3B 48 qRTPCR m02 41283 PTEN-17 1.01964017 0.0972503 PTEN 10 Hep3B 48 qRTPCR m02 89012 PTEN-18 0.59801882 0.08785774 PTEN 10 Hep3B 48 qRTPCR m02 89013 PTEN-19 4.02083263 0.66361002 PTEN 10 Hep3B 48 qRTPCR m02 89014 PTEN-20 3.9185628 0.52870307 PTEN 10 Hep3B 48 qRTPCR m02 89015 PTEN-21 4.12632285 1.01483873 PTEN 10 Hep3B 48 qRTPCR m02 51816 PTEN-22 1.51460652 0.21316211 PTEN 10 Hep3B 48 qRTPCR m02 61111 PTEN-23 1.30255321 0.03915479 PTEN 10 Hep3B 48 qRTPCR m02 61047 PTEN-24 0.82458263 0.0788691 PTEN 10 Hep3B 48 qRTPCR m02 89016 PTEN-25 1.56039569 0.31056364 PTEN 10 Hep3B 48 qRTPCR m02 89017 PTEN-26 4.76968333 0.46855982 PTEN 10 Hep3B 48 qRTPCR m02 89018 PTEN-27 2.74961402 0.24086949 PTEN 10 Hep3B 48 qRTPCR m02 89019 PTEN-28 2.44340558 0.19230037 PTEN 10 Hep3B 48 qRTPCR m02 74236 PTEN-29 1.27433857 0.13289234 PTEN 10 Hep3B 48 qRTPCR m02 74236 PTEN-29 0.13776815 0.00417678 PTEN 10 Hep3B 48 qRTPCR m08 89020 PTEN-31 0.20004166 0.39065427 PTEN 10 Hep3B 48 qRTPCR m09 76350 PTEN-32 0.1361327 0.24521716 PTEN 10 Hep3B 48 qRTPCR m02 76389 PTEN-33 0.48342976 0.01192756 PTEN 10 Hep3B 48 qRTPCR m08 89021 PTEN-34 1.08759613 0.10351 PTEN 10 Hep3B 48 qRTPCR m09 89022 PTEN-35 0.28097529 0.05874989 PTEN 10 Hep3B 48 qRTPCR m02 89023 PTEN-36 0.48746008 0.10270125 PTEN 10 Hep3B 48 qRTPCR m08 89024 PTEN-37 0.46050347 0.23685356 PTEN 10 Hep3B 48 qRTPCR m09 80510 PTEN-38 0.2342252 0.24522214 PTEN 10 Hep3B 48 qRTPCR m02 80568 PTEN-39 0.48046262 0.06091974 PTEN 10 Hep3B 48 qRTPCR m08 89025 PTEN-40 1.27629494 0.38069875 PTEN 10 Hep3B 48 qRTPCR m09 Ctrl Un 0.80860729 0.15650089 PTEN 0 Hep3B 48 qRTPCR Ctrl Lipo 1.00514358 0.0697499 PTEN 0 Hep3B 48 qRTPCR 89008 PTEN-01 0.83191514 0.05510382 PTEN 30 Hep3B qRTPCR m02 89009 PTEN-02 0.69640301 0.04148145 PTEN 30 Hep3B qRTPCR m02 89010 PTEN-03 0.9364329 0.05943612 PTEN 30 Hep3B qRTPCR m02 89011 PTEN-04 1.57254234 0.16131455 PTEN 30 Hep3B qRTPCR m02 1531 PTEN-05 12.1354345 3.69478325 PTEN 30 Hep3B qRTPCR m02 2270 PTEN-06 14.2372365 3.39064883 PTEN 30 Hep3B qRTPCR m02 2219 PTEN-07 4.11965478 2.59883266 PTEN 30 Hep3B qRTPCR m02 3435 PTEN-08 2.66792238 1.60845526 PTEN 30 Hep3B qRTPCR m02 3385 PTEN-09 2.2817098 1.36136205 PTEN 30 Hep3B qRTPCR m02 4787 PTEN-10 3.14656477 2.26205371 PTEN 30 Hep3B qRTPCR m02 4757 PTEN-11 4.57983826 1.96994502 PTEN 30 Hep3B qRTPCR m02 24934 PTEN-12 19.458362 13.4332744 PTEN 30 Hep3B qRTPCR m02 24915 PTEN-13 0.58881717 0.05126922 PTEN 30 Hep3B qRTPCR m02 39332 PTEN-14 0.82601341 0.18563565 PTEN 30 Hep3B qRTPCR m02 39286 PTEN-15 1.23046506 0.18613699 PTEN 30 Hep3B qRTPCR m02 41316 PTEN-16 3.45628514 1.44558974 PTEN 30 Hep3B qRTPCR m02 41283 PTEN-17 10.562783 1.18019211 PTEN 30 Hep3B qRTPCR m02 89012 PTEN-18 9.03078425 6.85482901 PTEN 30 Hep3B qRTPCR m02 89013 PTEN-19 0.80634403 0.05438837 PTEN 30 Hep3B qRTPCR m02 89014 PTEN-20 0.8553186 0.0783516 PTEN 30 Hep3B qRTPCR m02 89015 PTEN-21 1.35275775 0.04531143 PTEN 30 Hep3B qRTPCR m02 51816 PTEN-22 3.31051838 0.7915353 PTEN 30 Hep3B qRTPCR m02 61111 PTEN-23 17.1275928 6.94603845 PTEN 30 Hep3B qRTPCR m02 61047 PTEN-24 6.06326291 1.5223077 PTEN 30 Hep3B qRTPCR m02 89016 PTEN-25 1.73855426 1.06260753 PTEN 30 Hep3B qRTPCR m02 89017 PTEN-26 1.37883603 0.10624378 PTEN 30 Hep3B qRTPCR m02 89018 PTEN-27 1.52485659 0.10623726 PTEN 30 Hep3B qRTPCR m02 89019 PTEN-28 2.0131999 0.30247562 PTEN 30 Hep3B qRTPCR m02 74236 PTEN-29 8.01749596 3.41551951 PTEN 30 Hep3B qRTPCR m02 74236 PTEN-29 8.85841116 3.57067981 PTEN 30 Hep3B qRTPCR m08 89020 PTEN-31 0 0 PTEN 30 Hep3B qRTPCR m09 76350 PTEN-32 0 0 PTEN 30 Hep3B qRTPCR m02 76389 PTEN-33 0 0 PTEN 30 Hep3B qRTPCR m08 89021 PTEN-34 0 0 PTEN 30 Hep3B qRTPCR m09 89022 PTEN-35 0 0 PTEN 30 Hep3B qRTPCR m02 89023 PTEN-36 0 0 PTEN 30 Hep3B qRTPCR m08 89024 PTEN-37 1.22567385 0.03482309 PTEN 30 Hep3B qRTPCR m09 80510 PTEN-38 1.01471094 0.1252565 PTEN 30 Hep3B qRTPCR m02 80568 PTEN-39 1.17109414 0.21978072 PTEN 30 Hep3B qRTPCR m08 89025 PTEN-40 0.90144206 0.14463753 PTEN 30 Hep3B qRTPCR m09 Ctrl Un 1.10687578 0.21533079 PTEN 30 Hep3B qRTPCR Ctrl Lipo 1 0.19807141 PTEN 30 Hep3B qRTPCR 89008 PTEN-01 2.04195366 0.20849317 PTEN 10 Hep3B qRTPCR m02 89009 PTEN-02 4.60909206 0.60451206 PTEN 10 Hep3B qRTPCR m02 89010 PTEN-03 5.41071841 1.15640189 PTEN 10 Hep3B qRTPCR m02 89011 PTEN-04 3.16339355 0.47379274 PTEN 10 Hep3B qRTPCR m02 1531 PTEN-05 3.50856521 1.66486019 PTEN 10 Hep3B qRTPCR m02 2270 PTEN-06 1.34423802 0.06218687 PTEN 10 Hep3B qRTPCR m02 2219 PTEN-07 1.5973566 0.24378354 PTEN 10 Hep3B qRTPCR m02 3435 PTEN-08 3.09355861 0.70732608 PTEN 10 Hep3B qRTPCR m02 3385 PTEN-09 3.02316088 0.22498395 PTEN 10 Hep3B qRTPCR m02 4787 PTEN-10 2.23641263 0.37901219 PTEN 10 Hep3B qRTPCR m02 4757 PTEN-11 1.21259398 0.07976438 PTEN 10 Hep3B qRTPCR m02 24934 PTEN-12 1.13531291 0.02730918 PTEN 10 Hep3B qRTPCR m02 24915 PTEN-13 1.68234922 0.99325225 PTEN 10 Hep3B qRTPCR m02 39332 PTEN-14 3.3466445 1.36800003 PTEN 10 Hep3B qRTPCR m02 39286 PTEN-15 2.82725741 0.74559864 PTEN 10 Hep3B qRTPCR m02 41316 PTEN-16 1.8771887 0.03985459 PTEN 10 Hep3B qRTPCR m02 41283 PTEN-17 1.01442241 0.0972503 PTEN 10 Hep3B qRTPCR m02 89012 PTEN-18 0.5949586 0.08785774 PTEN 10 Hep3B qRTPCR m02 89013 PTEN-19 4.00025698 0.66361002 PTEN 10 Hep3B qRTPCR m02 89014 PTEN-20 3.89851049 0.52870307 PTEN 10 Hep3B qRTPCR m02 89015 PTEN-21 4.10520738 1.01483873 PTEN 10 Hep3B qRTPCR m02 51816 PTEN-22 1.50685588 0.21316211 PTEN 10 Hep3B qRTPCR m02 61111 PTEN-23 1.29588771 0.03915479 PTEN 10 Hep3B qRTPCR m02 61047 PTEN-24 0.82036303 0.0788691 PTEN 10 Hep3B qRTPCR m02 89016 PTEN-25 1.55241073 0.31056364 PTEN 10 Hep3B qRTPCR m02 89017 PTEN-26 4.74527562 0.46855982 PTEN 10 Hep3B qRTPCR m02 89018 PTEN-27 2.73554353 0.24086949 PTEN 10 Hep3B qRTPCR m02 89019 PTEN-28 2.43090204 0.19230037 PTEN 10 Hep3B qRTPCR m02 74236 PTEN-29 1.26781745 0.13289234 PTEN 10 Hep3B qRTPCR m02 74236 PTEN-29 0.13706315 0.00417678 PTEN 10 Hep3B qRTPCR m08 89020 PTEN-31 0.78869629 0.39065427 PTEN 10 Hep3B qRTPCR m09 76350 PTEN-32 1.51073942 0.24521716 PTEN 10 Hep3B qRTPCR m02 76389 PTEN-33 1.05861374 0.01192756 PTEN 10 Hep3B qRTPCR m08 89021 PTEN-34 1.04312863 0.10351 PTEN 10 Hep3B qRTPCR m09 89022 PTEN-35 0.90159995 0.05874989 PTEN 10 Hep3B qRTPCR m02 89023 PTEN-36 0.85954822 0.10270125 PTEN 10 Hep3B qRTPCR m08 89024 PTEN-37 0.80725368 0.23685356 PTEN 10 Hep3B qRTPCR m09 80510 PTEN-38 1.16628729 0.24522214 PTEN 10 Hep3B qRTPCR m02 80568 PTEN-39 0.85281606 0.06091974 PTEN 10 Hep3B qRTPCR m08 89025 PTEN-40 1.27583985 0.38069875 PTEN 10 Hep3B qRTPCR m09 Ctrl Un 0.80446944 0.15650089 PTEN 10 Hep3B qRTPCR Ctrl Lipo 1 0.0697499 PTEN 10 Hep3B qRTPCR 89008 PTEN-01 2.46858917 0.03063719 PTEN 30 HepG2 48 qRTPCR m02 89009 PTEN-02 1.65266096 0.27154944 PTEN 30 HepG2 48 qRTPCR m02 89010 PTEN-03 1.56078139 0.21101366 PTEN 30 HepG2 48 qRTPCR m02 89011 PTEN-04 0.65616195 0.18926703 PTEN 30 HepG2 48 qRTPCR m02 1531 PTEN-05 0.48099904 0.04632197 PTEN 30 HepG2 48 qRTPCR m02 2270 PTEN-06 0.7909963 0.03270627 PTEN 30 HepG2 48 qRTPCR m02 2219 PTEN-07 0.53872046 0.14632694 PTEN 30 HepG2 48 qRTPCR m02 3435 PTEN-08 0.41128342 0.097757 PTEN 30 HepG2 48 qRTPCR m02 3385 PTEN-09 0.60687582 0.17145346 PTEN 30 HepG2 48 qRTPCR m02 4787 PTEN-10 0.57459175 0.03798783 PTEN 30 HepG2 48 qRTPCR m02 4757 PTEN-11 0.90944845 0.09497654 PTEN 30 HepG2 48 qRTPCR m02 24934 PTEN-12 0.35748511 0.02782391 PTEN 30 HepG2 48 qRTPCR m02 24915 PTEN-13 0.80041903 0.20317037 PTEN 30 HepG2 48 qRTPCR m02 39332 PTEN-14 0.73925238 0.19461962 PTEN 30 HepG2 48 qRTPCR m02 39286 PTEN-15 1.51050395 0.12769327 PTEN 30 HepG2 48 qRTPCR m02 41316 PTEN-16 1.05322562 0.02781351 PTEN 30 HepG2 48 qRTPCR m02 41283 PTEN-17 1.10492008 0.2491756 PTEN 30 HepG2 48 qRTPCR m02 89012 PTEN-18 1.02218885 0.10992679 PTEN 30 HepG2 48 qRTPCR m02 89013 PTEN-19 1.32111033 0.08784151 PTEN 30 HepG2 48 qRTPCR m02 89014 PTEN-20 0.20726178 0.03784299 PTEN 30 HepG2 48 qRTPCR m02 89015 PTEN-21 1.16846444 0.18912677 PTEN 30 HepG2 48 qRTPCR m02 51816 PTEN-22 0.93229274 0.05224198 PTEN 30 HepG2 48 qRTPCR m02 61111 PTEN-23 1.21504563 0.27766444 PTEN 30 HepG2 48 qRTPCR m02 61047 PTEN-24 0.41141525 0.05099622 PTEN 30 HepG2 48 qRTPCR m02 89016 PTEN-25 1.18189558 0.17039788 PTEN 30 HepG2 48 qRTPCR m02 89017 PTEN-26 0.91690612 0.04448978 PTEN 30 HepG2 48 qRTPCR m02 89018 PTEN-27 1.05014538 0.11896204 PTEN 30 HepG2 48 qRTPCR m02 89019 PTEN-28 0.23938043 0.05714057 PTEN 30 HepG2 48 qRTPCR m02 74236 PTEN-29 0.83974164 0.13173022 PTEN 30 HepG2 48 qRTPCR m02 74236 PTEN-29 1.11834626 0.1477032 PTEN 30 HepG2 48 qRTPCR m08 89020 PTEN-31 0.47919683 0.10224302 PTEN 30 HepG2 48 qRTPCR m09 76350 PTEN-32 0.57689657 0.07699519 PTEN 30 HepG2 48 qRTPCR m02 76389 PTEN-33 0.57802595 0.22410403 PTEN 30 HepG2 48 qRTPCR m08 89021 PTEN-34 1.14567902 0.38024147 PTEN 30 HepG2 48 qRTPCR m09 89022 PTEN-35 0.41306284 0.28507158 PTEN 30 HepG2 48 qRTPCR m02 89023 PTEN-36 0.09621871 0.05518511 PTEN 30 HepG2 48 qRTPCR m08 89024 PTEN-37 0.57614296 0.12911061 PTEN 30 HepG2 48 qRTPCR m09 80510 PTEN-38 0.09621871 0.05518511 PTEN 30 HepG2 48 qRTPCR m02 80568 PTEN-39 2.22228207 1.70473932 PTEN 30 HepG2 48 qRTPCR m08 89025 PTEN-40 0.0972852 0.02874248 PTEN 30 HepG2 48 qRTPCR m09 Ctrl Un 1.0245258 0.16493375 PTEN 0 HepG2 48 qRTPCR Ctrl Lipo 0.20387263 0.03098558 PTEN 0 HepG2 48 qRTPCR

TABLE 4 Formatted oligonucleotide sequences made for testing in the lab showing  nucleotide modifications. Base OligoID Sequence Formatted Sequence SeqID PTEN-01 TCTGGAGCAGA dTs;InaCs;dTs;InaGs;dGs;InaAs;dGs;InaCs;dAs;InaGs; 89008 m02 GATA dAs;InaGs;dAs;InaTs;dA-Sup PTEN-02 TCCAAGTACTT dTs;InaCs;dCs;InaAs;dAs;InaGs;dTs;InaAs;dCs;InaTs; 89009 m02 CCAT dTs;InaCs;dCs;InaAs;dT-Sup PTEN-03 TGATTTCCCTT dTs;InaGs;dAs;InaTs;dTs;InaTs;dCs;InaCs;dCs;InaTs;  89010 m02 AGGA dTs;InaAs;dGs;InaGs;dA-Sup PTEN-04 TATCTAACGAG dTs;InaAs;dTs;InaCs;dTs;InaAs;dAs;InaCs;dGs;InaAs; 89011 m02 ACCT dGs;InaAs;dCs;InaCs;dT-Sup PTEN-05 TGCACGGTTAG dTs;InaGs;dCs;InaAs;dCs;InaGs;dGs;InaTs;dTs;InaAs; 1531 m02 AAAA dGs;InaAs;dAs;InaAs;dA-Sup PTEN-06 TTCTAAGAGAG dTs;InaTs;dCs;InaTs;dAs;InaAs;dGs;InaAs;dGs;InaAs; 2270 m02 TGAC dGs;InaTs;dGs;InaAs;dC-Sup PTEN-07 AGGTCAAGTCT dAs;InaGs;dGs;InaTs;dCs;InaAs;dAs;InaGs;dTs;InaCs; 2219 m02 AAGT dTs;InaAs;dAs;InaGs;dT-Sup PTEN-08 TGACCACTAAC dTs;InaGs;dAs;InaCs;dCs;InaAs;dCs;InaTs;dAs;InaAs; 3435 m02 TTTT dCs;InaTs;dTs;InaTs;dT-Sup PTEN-09 TACACACTGTT dTs;InaAs;dCs;InaAs;dCs;InaAs;dCs;InaTs;dGs;InaTs; 3385 m02 AAAA dTs;InaAs;dAs;InaAs;dA-Sup PTEN-10 TCCAATCACTA dTs;InaCs;dCs;InaAs;dAs;InaTs;dCs;InaAs;dCs;InaTs; 4787 m02 CTTT dAs;InaCs;dTs;InaTs;dT-Sup PTEN-11 CTTTTCACAGG dCs;InaTs;dTs;InaTs;dTs;InaCs;dAs;InaCs;dAs;InaGs; 4757 m02 TTAG dGs;InaTs;dTs;InaAs;dG-Sup PTEN-12 TAAGTTCTTAA dTs;InaAs;dAs;InaGs;dTs;InaTs;dCs;InaTs;dTs;InaAs; 24934 m02 AGCA dAs;InaAs;dGs;InaCs;dA-Sup PTEN-13 GTCACTACACA dGs;InaTs;dCs;InaAs;dCs;InaTs;dAs;InaCs;dAs;InaCs; 24915 m02 CAGG dAs;InaCs;dAs;InaGs;dG-Sup PTEN-14 TTATGTACATC dTs;InaTs;dAs;InaTs;dGs;InaTs;dAs;InaCs;dAs;InaTs; 39332 m02 TTTC dCs;InaTs;dTs;InaTs;dC-Sup PTEN-15 ACAGAATACTA dAs;InaCs;dAs;InaGs;dAs;InaAs;dTs;InaAs;dCs;InaTs; 39286 m02 CTTT dAs;InaCs;dTs;InaTs;dT-Sup PTEN-16 TGATTAGCACA dTs;InaGs;dAs;InaTs;dTs;InaAs;dGs;InaCs;dAs;InaCs; 41316 m02 GACC dAs;InaGs;dAs;InaCs;dC-Sup PTEN-17 TCACCTCCACA dTs;InaCs;dAs;InaCs;dCs;InaTs;dCs;InaCs;dAs;InaCs; 41283 m02 CTTT dAs;InaCs;dTs;InaTs;dT-Sup PTEN-18 TCATTTCTTCT dTs;InaCs;dAs;InaTs;dTs;InaTs;dCs;InaTs;dTs;InaCs;  89012 m02 GTTG dTs;InaGs;dTs;InaTs;dG-Sup PTEN-19 TATGTAGCTTT dTs;InaAs;dTs;InaGs;dTs;InaAs;dGs;InaCs;dTs;InaTs; 89013 m02 GGAA dTs;InaGs;dGs;InaAs;dA-Sup PTEN-20 GATAGGTACAG dGs;InaAs;dTs;InaAs;dGs;InaGs;dTs;InaAs;dCs;InaAs; 89014 m02 CTGT dGs;InaCs;dTs;InaGs;dT-Sup PTEN-21 TAAACAGCAAC dTs;InaAs;dAs;InaAs;dCs;InaAs;dGs;InaCs;dAs;InaAs; 89015 m02 ATAA dCs;InaAs;dTs;InaAs;dA-Sup PTEN-22 TTACCCAAAAG dTs;InaTs;dAs;InaCs;dCs;InaCs;dAs;InaAs;dAs;InaAs; 51816 m02 TGAA dGs;InaTs;dGs;InaAs;dA-Sup PTEN-23 TGGCATTAGAA dTs;InaGs;dGs;InaCs;dAs;InaTs;dTs;InaAs;dGs;InaAs; 61111 m02 AGTA dAs;InaAs;dGs;InaTs;dA-Sup PTEN-24 TGACAGATATA dTs;InaGs;dAs;InaCs;dAs;InaGs;dAs;InaTs;dAs;InaTs; 61047 m02 CTAA dAs;InaCs;dTs;InaAs;dA-Sup PTEN-25 TGAATCGGAAG dTs;InaGs;dAs;InaAs;dTs;InaCs;dGs;InaGs;dAs;InaAs; 89016 m02 GGTT dGs;InaGs;dGs;InaTs;dT-Sup PTEN-26 TAATATGAGCA dTs;InaAs;dAs;InaTs;dAs;InaTs;dGs;InaAs;dGs;InaCs; 89017 m02 GGTG dAs;InaGs;dGs;InaTs;dG-Sup PTEN-27 CTCATCCAATT dCs;InaTs;dCs;InaAs;dTs;InaCs;dCs;InaAs;dAs;InaTs; 89018 m02 CACT dTs;InaCs;dAs;InaCs;dT-Sup PTEN-28 TCAAGGAAGG dTs;InaCs;dAs;InaAs;dGs;InaGs;dAs;InaAs;dGs;InaGs; 89019 m02 ATGGT dAs;InaTs;dGs;InaGs;dT-Sup PTEN-29 TAAATCTTGAG dTs;InaAs;dAs;InaAs;dTs;InaCs;dTs;InaTs;dGs;InaAs; 74236 m02 ACGG dGs;InaAs;dCs;InaGs;dG-Sup PTEN-29 TAAATCTTGAG InaTs;InaAs;InaAs;dAs;dTs;dCs;dTs;dTs;dGs;dAs;dGs; 74236 m08 ACGG dAs;InaCs;InaGs;InaG-Sup PTEN-31 AGCCCTGT InaAs;InaGs;InaCs;InaCs;InaCs;InaTs;InaGs;InaT-Sup 89020 m09 PTEN-32 TCCCACACTGA dTs;InaCs;dCs;InaCs;dAs;InaCs;dAs;InaCs;dTs;InaGs; 76350 m02 CATA dAs;InaCs;dAs;InaTs;dA-Sup PTEN-33 TCATTGCTCCT InaTs;InaCs;InaAs;dTs;dTs;dGs;dCs;dTs;dCs;dCs;dTs; 76389 m08 CCTG dCs;InaCs;InaTs;InaG-Sup PTEN-34 CCAACCAT InaCs;InaCs;InaAs;InaAs;InaCs;InaCs;InaAs;InaT-Sup 89021 m09 PTEN-35 TTGTAGACAGC dTs;InaTs;dGs;InaTs;dAs;InaGs;dAs;InaCs;dAs;InaGs; 89022 m02 ATAT dCs;InaAs;dTs;InaAs;dT-Sup PTEN-36 TTCTTATACAT InaTs;InaTs;InaCs;dTs;dTs;dAs;dTs;dAs;dCs;dAs;dTs; 89023 m08 TCTG dTs;InaCs;InaTs;InaG-Sup PTEN-37 GCCTTTTG InaGs;InaCs;InaCs;InaTs;InaTs;InaTs;InaTs;InaG-Sup 89024 m09 PTEN-38 TAAGTGGTACA dTs;InaAs;dAs;InaGs;dTs;InaGs;dGs;InaTs;dAs;InaCs; 80510 m02 AATT dAs;InaAs;dAs;InaTs;dT-Sup PTEN-39 GAAAAGACTGC InaGs;InaAs;InaAs;dAs;dAs;dGs;dAs;dCs;dTs;dGs;  80568 m08 TATT dCs;dTs;InaAs;InaTs;InaT-Sup PTEN-40 CTGTTCAA InaCs;InaTs;InaGs;InaTs;InaTs;InaCs;InaAs;InaA-Sup 89025 m09 PTEN-41 AGAACGCCTTA InaAs;omeGs;InaAs;omeAs;InaCs;omeGs;InaCs;omeCs; 2905 m01 TAAG InaTs;omeUs;InaAs;omeUs;InaAs;omeAs;InaG-Sup PTEN-42 AAGAACGCCTT InaAs;omeAs;InaGs;omeAs;InaAs;omeCs;InaGs;omeCs; 2906 m01 ATAA InaCs;omeUs;InaTs;omeAs;InaTs;omeAs;InaA-Sup PTEN-43 GTAAGAACGCC InaGs;omeUs;InaAs;omeAs;InaGs;omeAs;InaAs;omeCs; 2908 m01 TTAT InaGs;omeCs;InaCs;omeUs;InaTs;omeAs;InaT-Sup PTEN-44 AGTAAGAACGC InaAs;omeGs;InaTs;omeAs;InaAs;omeGs;InaAs;omeAs; 2909 m01 CTTA InaCs;omeGs;InaCs;omeCs;InaTs;omeUs;InaA-Sup PTEN-45 TAGTAAGAACG InaTs;omeAs;InaGs;omeUs;InaAs;omeAs;InaGs;omeAs; 2910 m01 CCTT InaAs;omeCs;InaGs;omeCs;InaCs;omeUs;InaT-Sup PTEN-46 CTAGTAAGAAC InaCs;omeUs;InaAs;omeGs;InaTs;omeAs;InaAs;omeGs; 2911 m01 GCCT InaAs;omeAs;InaCs;omeGs;InaCs;omeCs;InaT-Sup PTEN-47 TTTGAAGCCCG InaTs;omeUs;InaTs;omeGs;InaAs;omeAs;InaGs;omeCs; 3423 m01 AAGG InaCs;omeCs;InaGs;omeAs;InaAs;omeGs;InaG-Sup PTEN-48 TTTTGAAGCCC InaTs;omeUs;InaTs;omeUs;InaGs;omeAs;InaAs;omeGs; 3424 m01 GAAG InaCs;omeCs;InaCs;omeGs;InaAs;omeAs;InaG-Sup PTEN-49 CTTTTGAAGCC InaCs;omeUs;InaTs;omeUs;InaTs;omeGs;InaAs;omeAs; 3425 m01 CGAA InaGs;omeCs;InaCs;omeCs;InaGs;omeAs;InaA-Sup PTEN-50 TCGATGACCAC InaTs;omeCs;InaGs;omeAs;InaTs;omeGs;InaAs;omeCs; 3439 m01 TAAC InaCs;omeAs;InaCs;omeUs;InaAs;omeAs;InaC-Sup PTEN-51 TTCGATGACCA InaTs;omeUs;InaCs;omeGs;InaAs;omeUs;InaGs;omeAs; 3440 m01 CTAA InaCs;omeCs;InaAs;omeCs;InaTs;omeAs;InaA-Sup PTEN-52 TTTCGATGACC InaTs;omeUs;InaTs;omeCs;InaGs;omeAs;InaTs;omeGs; 3441 m01 ACTA InaAs;omeCs;InaCs;omeAs;InaCs;omeUs;InaA-Sup PTEN-53 TTTTCGATGAC InaTs;omeUs;InaTs;omeUs;InaCs;omeGs;InaAs;omeUs; 3442 m01 CACT InaGs;omeAs;InaCs;omeCs;InaAs;omeCs;InaT-Sup PTEN-54 CTTTTCGATGA InaCs;omeUs;InaTs;omeUs;InaTs;omeCs;InaGs;omeAs; 3443 m01 CCAC InaTs;omeGs;InaAs;omeCs;InaCs;omeAs;InaC-Sup PTEN-55 GCTTTTCGATG InaGs;omeCs;InaTs;omeUs;InaTs;omeUs;InaCs;omeGs; 3444 m01 ACCA InaAs;omeUs;InaGs;omeAs;InaCs;omeCs;InaA-Sup PTEN-56 TGCTTTTCGAT InaTs;omeGs;InaCs;omeUs;InaTs;omeUs;InaTs;omeCs; 3445 m01 GACC InaGs;omeAs;InaTs;omeGs;InaAs;omeCs;InaC-Sup PTEN-57 ATGCTTTTCGA InaAs;omeUs;InaGs;omeCs;InaTs;omeUs;InaTs;omeUs; 3446 m01 TGAC InaCs;omeGs;InaAs;omeUs;InaGs;omeAs;InaC-Sup PTEN-58 AATGCTTTTCG InaAs;omeAs;InaTs;omeGs;InaCs;omeUs;InaTs;omeUs; 3447 m01 ATGA InaTs;omeCs;InaGs;omeAs;InaTs;omeGs;InaA-Sup PTEN-59 TTAATGCTTTT InaTs;omeUs;InaAs;omeAs;InaTs;omeGs;InaCs;omeUs; 3449 m01 CGAT InaTs;omeUs;InaTs;omeCs;InaGs;omeAs;InaT-Sup PTEN-60 ACGCAATATTT InaAs;omeCs;InaGs;omeCs;InaAs;omeAs;InaTs;omeAs; 4490 m01 GATA InaTs;omeUs;InaTs;omeGs;InaAs;omeUs;InaA-Sup PTEN-61 TGACGCAATAT InaTs;omeGs;InaAs;omeCs;InaGs;omeCs;InaAs;omeAs; 4492 m01 TTGA InaTs;omeAs;InaTs;omeUs;InaTs;omeGs;InaA-Sup PTEN-62 TTTGACGCAAT InaTs;omeUs;InaTs;omeGs;InaAs;omeCs;InaGs;omeCs; 4494 m01 ATTT InaAs;omeAs;InaTs;omeAs;InaTs;omeUs;InaT-Sup PTEN-63 ATTTGACGCAA InaAs;omeUs;InaTs;omeUs;InaGs;omeAs;InaCs;omeGs; 4495 m01 TATT InaCs;omeAs;InaAs;omeUs;InaAs;omeUs;InaT-Sup PTEN-64 CATTTGACGCA InaCs;omeAs;InaTs;omeUs;InaTs;omeGs;InaAs;omeCs; 4496 m01 ATAT InaGs;omeCs;InaAs;omeAs;InaTs;omeAs;InaT-Sup PTEN-65 TCAATTTTCCT InaTs;omeCs;InaAs;omeAs;InaTs;omeUs;InaTs;omeUs; 4845 m01 CGGA InaCs;omeCs;InaTs;omeCs;InaGs;omeGs;InaA-Sup PTEN-66 CTCAATTTTCC InaCs;omeUs;InaCs;omeAs;InaAs;omeUs;InaTs;omeUs; 4846 m01 TCGG InaTs;omeCs;InaCs;omeUs;InaCs;omeGs;InaG-Sup PTEN-67 CAACGGTTTCT InaCs;omeAs;InaAs;omeCs;InaGs;omeGs;InaTs;omeUs; 6111 m01 ACAG InaTs;omeCs;InaTs;omeAs;InaCs;omeAs;InaG-Sup PTEN-68 CCAACGGTTTC InaCs;omeCs;InaAs;omeAs;InaCs;omeGs;InaGs;omeUs; 6112 m01 TACA InaTs;omeUs;InaCs;omeUs;InaAs;omeCs;InaA-Sup PTEN-69 CCCAACGGTTT InaCs;omeCs;InaCs;omeAs;InaAs;omeCs;InaGs;omeGs; 6113 m01 CTAC InaTs;omeUs;InaTs;omeCs;InaTs;omeAs;InaC-Sup PTEN-70 TTAACCCAACG InaTs;omeUs;InaAs;omeAs;InaCs;omeCs;InaCs;omeAs; 6117 m01 GTTT InaAs;omeCs;InaGs;omeGs;InaTs;omeUs;InaT-Sup PTEN-71 TTTAACCCAAC InaTs;omeUs;InaTs;omeAs;InaAs;omeCs;InaCs;omeCs; 6118 m01 GGTT InaAs;omeAs;InaCs;omeGs;InaGs;omeUs;InaT-Sup PTEN-72 GTTTAACCCAA InaGs;omeUs;InaTs;omeUs;InaAs;omeAs;InaCs;omeCs; 6119 m01 CGGT InaCs;omeAs;InaAs;omeCs;InaGs;omeGs;InaT-Sup PTEN-73 TTCGCTGCCAT InaTs;omeUs;InaCs;omeGs;InaCs;omeUs;InaGs;omeCs; 24440 m01 ATTC InaCs;omeAs;InaTs;omeAs;InaTs;omeUs;InaC-Sup PTEN-74 ATTCGCTGCCA InaAs;omeUs;InaTs;omeCs;InaGs;omeCs;InaTs;omeGs; 24441 m01 TATT InaCs;omeCs;InaAs;omeUs;InaAs;omeUs;InaT-Sup PTEN-75 AATTCGCTGCC InaAs;omeAs;InaTs;omeUs;InaCs;omeGs;InaCs;omeUs; 24442 m01 ATAT InaGs;omeCs;InaCs;omeAs;InaTs;omeAs;InaT-Sup PTEN-76 GAATTCGCTGC InaGs;omeAs;InaAs;omeUs;InaTs;omeCs;InaGs;omeCs; 24443 m01 CATA InaTs;omeGs;InaCs;omeCs;InaAs;omeUs;InaA-Sup PTEN-77 TGATAGTCTAA InaTs;omeGs;InaAs;omeUs;InaAs;omeGs;InaTs;omeCs; 24778 m01 CCCT InaTs;omeAs;InaAs;omeCs;InaCs;omeCs;InaT-Sup PTEN-78 CCTTCGATTTC InaCs;omeCs;InaTs;omeUs;InaCs;omeGs;InaAs;omeUs; 24818 m01 CATT InaTs;omeUs;InaCs;omeCs;InaAs;omeUs;InaT-Sup PTEN-79 GTCCTTCGATT InaGs;omeUs;InaCs;omeCs;InaTs;omeUs;InaCs;omeGs; 24820 m01 TCCA InaAs;omeUs;InaTs;omeUs;InaCs;omeCs;InaA-Sup PTEN-80 TTCATCAGTAT InaTs;omeUs;InaCs;omeAs;InaTs;omeCs;InaAs;omeGs; 33629 m01 GCGC InaTs;omeAs;InaTs;omeGs;InaCs;omeGs;InaC-Sup PTEN-81 GCTATCGATTT InaGs;omeCs;InaTs;omeAs;InaTs;omeCs;InaGs;omeAs; 51896 m01 CTTG InaTs;omeUs;InaTs;omeCs;InaTs;omeUs;InaG-Sup PTEN-82 TGCTATCGATT InaTs;omeGs;InaCs;omeUs;InaAs;omeUs;InaCs;omeGs; 51897 m01 TCTT InaAs;omeUs;InaTs;omeUs;InaCs;omeUs;InaT-Sup PTEN-83 ATGCTATCGAT InaAs;omeUs;InaGs;omeCs;InaTs;omeAs;InaTs;omeCs; 51898 m01 TTCT InaGs;omeAs;InaTs;omeUs;InaTs;omeCs;InaT-Sup PTEN-84 AATGCTATCGA InaAs;omeAs;InaTs;omeGs;InaCs;omeUs;InaAs;omeUs; 51899 m01 TTTC InaCs;omeGs;InaAs;omeUs;InaTs;omeUs;InaC-Sup PTEN-85 AAATGCTATCG InaAs;omeAs;InaAs;omeUs;InaGs;omeCs;InaTs;omeAs; 51900 m01 ATTT InaTs;omeCs;InaGs;omeAs;InaTs;omeUs;InaT-Sup PTEN-86 GCAAATGCTAT InaGs;omeCs;InaAs;omeAs;InaAs;omeUs;InaGs;omeCs; 51902 m01 CGAT InaTs;omeAs;InaTs;omeCs;InaGs;omeAs;InaT-Sup PTEN-87 TGCAAATGCTA InaTs;omeGs;InaCs;omeAs;InaAs;omeAs;InaTs;omeGs; 51903 m01 TCGA InaCs;omeUs;InaAs;omeUs;InaCs;omeGs;InaA-Sup PTEN-88 CACGCTCTATA InaCs;omeAs;InaCs;omeGs;InaCs;omeUs;InaCs;omeUs; 51915 m01 CTGC InaAs;omeUs;InaAs;omeCs;InaTs;omeGs;InaC-Sup PTEN-89 GCACGCTCTAT InaGs;omeCs;InaAs;omeCs;InaGs;omeCs;InaTs;omeCs; 51916 m01 ACTG InaTs;omeAs;InaTs;omeAs;InaCs;omeUs;InaG-Sup PTEN-90 CTGCACGCTCT InaCs;omeUs;InaGs;omeCs;InaAs;omeCs;InaGs;omeCs; 51918 m01 ATAC InaTs;omeCs;InaTs;omeAs;InaTs;omeAs;InaC-Sup PTEN-91 ATTATCTGCAC InaAs;omeUs;InaTs;omeAs;InaTs;omeCs;InaTs;omeGs; 51923 m01 GCTC InaCs;omeAs;InaCs;omeGs;InaCs;omeUs;InaC-Sup PTEN-92 CATTATCTGCA InaCs;omeAs;InaTs;omeUs;InaAs;omeUs;InaCs;omeUs; 51924 m01 CGCT InaGs;omeCs;InaAs;omeCs;InaGs;omeCs;InaT-Sup PTEN-93 TCATTATCTGC InaTs;omeCs;InaAs;omeUs;InaTs;omeAs;InaTs;omeCs; 51925 m01 ACGC InaTs;omeGs;InaCs;omeAs;InaCs;omeGs;InaC-Sup PTEN-94 CTTGCACCCTA InaCs;omeUs;InaTs;omeGs;InaCs;omeAs;InaCs;omeCs; 81225 m01 GCGC InaCs;omeUs;InaAs;omeGs;InaCs;omeGs;InaC-Sup PTEN-95 CACCCTAGCGC InaCs;omeAs;InaCs;omeCs;InaCs;omeUs;InaAs;omeGs; 81229 m01 ATAC InaCs;omeGs;InaCs;omeAs;InaTs;omeAs;InaC-Sup PTEN-96 CCCTAGCGCAT InaCs;omeCs;InaCs;omeUs;InaAs;omeGs;InaCs;omeGs; 81231 m01 ACTG InaCs;omeAs;InaTs;omeAs;InaCs;omeUs;InaG-Sup PTEN-97 CCTAGCGCATA InaCs;omeCs;InaTs;omeAs;InaGs;omeCs;InaGs;omeCs; 81232 m01 CTGA InaAs;omeUs;InaAs;omeCs;InaTs;omeGs;InaA-Sup PTEN-98 CTAGCGCATAC InaCs;omeUs;InaAs;omeGs;InaCs;omeGs;InaCs;omeAs; 81233 m01 TGAT InaTs;omeAs;InaCs;omeUs;InaGs;omeAs;InaT-Sup PTEN-99 TAGCGCATACT InaTs;omeAs;InaGs;omeCs;InaGs;omeCs;InaAs;omeUs; 81234 m01 GATG InaAs;omeCs;InaTs;omeGs;InaAs;omeUs;InaG-Sup PTEN-100 GCGCATACTGA InaGs;omeCs;InaGs;omeCs;InaAs;omeUs;InaAs;omeCs; 81236 m01 TGAA InaTs;omeGs;InaAs;omeUs;InaGs;omeAs;InaA-Sup EPO-24 TGCACAGGTCC dTs;InaGs;dCs;InaAs;dCs;InaAs;dGs;InaGs;dTs;InaCs; 89026 m02 CGCC dCs;InaCs;dGs;InaCs;dC-Sup EPO-26 TTTCCCGCTGA dTs;InaTs;dTs;InaCs;dCs;InaCs;dGs;InaCs;dTs;InaGs;  89027 m02 AGCA dAs;InaAs;dGs;InaCs;dA-Sup GAPDH- TTGTCATACCA InaTs;InaTs;InaGs;dTs;dCs;dAs;dTs;dAs;dCs;dCs;dAs; 89028 01 m08 GGAA dGs;InaGs;InaAs;InaA-Sup

BRIEF DESCRIPTION OF THE SEQUENCE LISTING

SEQ ID Chrom Gene Chr. Start Chr. End Strand 1 chr10 PTEN 89611194 89740532 + 2 chr10 PTEN 89611194 89740532 − 3 chr19 Pten 32820066 32912650 + 4 chr19 Pten 32820066 32912650 − 5 chr10 PTEN 89624228 89624270 + 6 chr10 PTEN 89624833 89624878 + 7 chr10 PTEN 89624926 89624970 + 8 chr10 PTEN 89625394 89625442 + 9 chr10 PTEN 89625544 89625602 + 10 chr10 PTEN 89625817 89625863 + 11 chr10 PTEN 89625913 89625938 + 12 chr10 PTEN 89625981 89626027 + 13 chr10 PTEN 89626204 89626244 + 14 chr10 PTEN 89626597 89626641 + 15 chr10 PTEN 89626724 89626775 + 16 chr10 PTEN 89626875 89626911 + 17 chr10 PTEN 89627125 89627169 + 18 chr10 PTEN 89628194 89628243 + 19 chr10 PTEN 89630898 89630936 + 20 chr10 PTEN 89633768 89633831 + 21 chr10 PTEN 89637731 89637778 + 22 chr10 PTEN 89655949 89655994 + 23 chr10 PTEN 89685417 89685446 + 24 chr10 PTEN 89686532 89686579 + 25 chr10 PTEN 89686846 89686893 + 26 chr10 PTEN 89690160 89690213 + 27 chr10 PTEN 89691658 89691701 + 28 chr10 PTEN 89692927 89692973 + 29 chr10 PTEN 89693941 89693990 + 30 chr10 PTEN 89695260 89695313 + 31 chr10 PTEN 89695827 89695873 + 32 chr10 PTEN 89697310 89697355 + 33 chr10 PTEN 89698069 89698110 + 34 chr10 PTEN 89698500 89698543 + 35 chr10 PTEN 89698790 89698828 + 36 chr10 PTEN 89699611 89699656 + 37 chr10 PTEN 89700446 89700493 + 38 chr10 PTEN 89700876 89700919 + 39 chr10 PTEN 89701325 89701377 + 40 chr10 PTEN 89701617 89701717 + 41 chr10 PTEN 89701764 89701818 + 42 chr10 PTEN 89701915 89701962 + 43 chr10 PTEN 89712065 89712111 + 44 chr10 PTEN 89712351 89712402 + 45 chr10 PTEN 89712411 89712510 + 46 chr10 PTEN 89714201 89714228 + 47 chr10 PTEN 89717191 89717238 + 48 chr10 PTEN 89720717 89720765 + 49 chr10 PTEN 89723393 89723443 + 50 chr10 PTEN 89725518 89725564 + 51 chr10 PTEN 89725617 89725658 + 52 chr10 PTEN 89725819 89725865 + 53 chr10 PTEN 89726333 89726368 + 54 chr10 PTEN 89726640 89726709 + 55 chr10 PTEN 89727525 89727567 + 56 chr10 PTEN 89727527 89727569 + 57 chr10 PTEN 89728125 89728171 + 58 chr10 PTEN 89728126 89728170 + 59 chr10 PTEN 89728128 89728172 + 60 chr10 PTEN 89730064 89730112 + 61 chr10 PTEN 89730269 89730384 + 62 chr10 PTEN 89622228 89626270 + 63 chr10 PTEN 89622833 89626878 + 64 chr10 PTEN 89622926 89626970 + 65 chr10 PTEN 89623394 89627442 + 66 chr10 PTEN 89623544 89627602 + 67 chr10 PTEN 89623817 89627863 + 68 chr10 PTEN 89623913 89627938 + 69 chr10 PTEN 89623981 89628027 + 70 chr10 PTEN 89624204 89628244 + 71 chr10 PTEN 89624597 89628641 + 72 chr10 PTEN 89624724 89628775 + 73 chr10 PTEN 89624875 89628911 + 74 chr10 PTEN 89625125 89629169 + 75 chr10 PTEN 89626194 89630243 + 76 chr10 PTEN 89628898 89632936 + 77 chr10 PTEN 89631768 89635831 + 78 chr10 PTEN 89635731 89639778 + 79 chr10 PTEN 89653949 89657994 + 80 chr10 PTEN 89683417 89687446 + 81 chr10 PTEN 89684532 89688579 + 82 chr10 PTEN 89684846 89688893 + 83 chr10 PTEN 89688160 89692213 + 84 chr10 PTEN 89689658 89693701 + 85 chr10 PTEN 89690927 89694973 + 86 chr10 PTEN 89691941 89695990 + 87 chr10 PTEN 89693260 89697313 + 88 chr10 PTEN 89693827 89697873 + 89 chr10 PTEN 89695310 89699355 + 90 chr10 PTEN 89696069 89700110 + 91 chr10 PTEN 89696500 89700543 + 92 chr10 PTEN 89696790 89700828 + 93 chr10 PTEN 89697611 89701656 + 94 chr10 PTEN 89698446 89702493 + 95 chr10 PTEN 89698876 89702919 + 96 chr10 PTEN 89699325 89703377 + 97 chr10 PTEN 89699617 89703717 + 98 chr10 PTEN 89699764 89703818 + 99 chr10 PTEN 89699915 89703962 + 100 chr10 PTEN 89710065 89714111 + 101 chr10 PTEN 89710351 89714402 + 102 chr10 PTEN 89710411 89714510 + 103 chr10 PTEN 89712201 89716228 + 104 chr10 PTEN 89715191 89719238 + 105 chr10 PTEN 89718717 89722765 + 106 chr10 PTEN 89721393 89725443 + 107 chr10 PTEN 89723518 89727564 + 108 chr10 PTEN 89723617 89727658 + 109 chr10 PTEN 89723819 89727865 + 110 chr10 PTEN 89724333 89728368 + 111 chr10 PTEN 89724640 89728709 + 112 chr10 PTEN 89725525 89729567 + 113 chr10 PTEN 89725527 89729569 + 114 chr10 PTEN 89726125 89730171 + 115 chr10 PTEN 89726126 89730170 + 116 chr10 PTEN 89726128 89730172 + 117 chr10 PTEN 89728064 89732112 + 118 chr10 PTEN 89728269 89732384 + 119 chr10 PTEN 89623576 89623622 − 120 chr10 PTEN 89623906 89623956 − 121 chr10 PTEN 89624031 89624073 − 122 chr10 PTEN 89624202 89624247 − 123 chr10 PTEN 89624760 89624805 − 124 chr10 PTEN 89625073 89625113 − 125 chr10 PTEN 89628887 89628953 − 126 chr10 PTEN 89665539 89665573 − 127 chr10 PTEN 89692964 89693006 − 128 chr10 PTEN 89695528 89695586 − 129 chr10 PTEN 89695765 89695876 − 130 chr10 PTEN 89695889 89695911 − 131 chr10 PTEN 89697361 89697418 − 132 chr10 PTEN 89697767 89697812 − 133 chr10 PTEN 89721856 89721896 − 134 chr10 PTEN 89621576 89625622 − 135 chr10 PTEN 89621906 89625956 − 136 chr10 PTEN 89622031 89626073 − 137 chr10 PTEN 89622202 89626247 − 138 chr10 PTEN 89622760 89626805 − 139 chr10 PTEN 89623073 89627113 − 140 chr10 PTEN 89626887 89630953 − 141 chr10 PTEN 89663539 89667573 − 142 chr10 PTEN 89690964 89695006 − 143 chr10 PTEN 89693528 89697586 − 144 chr10 PTEN 89693765 89697876 − 145 chr10 PTEN 89693889 89697911 − 146 chr10 PTEN 89695361 89699418 − 147 chr10 PTEN 89695767 89699812 − 148 chr10 PTEN 89719856 89723896 −

Single Strand Oligonucleotides (Antisense Strand of Target Gene)

SegID range: 149-63340, 89008-89021, 89024-89025

SeqIDs w/o G Runs:

149-152, 167-258, 272-328, 342-369, 392-716, 731-733, 757-831, 845-861, 882, 896-996, 1021-1068, 1082-1086, 1152-1160, 1182-1187, 1209-1411, 1433-1455, 1469-1622, 1636-1741, 1756-1791, 1805-1811, 1825-1830, 1854-1896, 1911-1948, 1962-1991, 2005-2079, 2094-2135, 2149-2327, 2341-2608, 2622-2940, 2954-3045, 3059-3364, 3378-3504, 3518-3915, 3929-3965, 3979-4068, 4090-4288, 4302-4608, 4622-6150, 6164-6620, 6634-6917, 6931-6967, 6981-6998, 7012-7033, 7047-7120, 7129-8466, 8480-8599, 8617-8623, 8637-9162, 9176-9238, 9247-9269, 9283-9405, 9419-9450, 9464-9570, 9584-10165, 10179-10250, 10264-10379, 10406-10623, 10634-10698, 10712-10755, 10768-10860, 10874-10891, 10906-10943, 10957-11063, 11078-11196, 11216-11225, 11239-11292, 11308-11425, 11439-11868, 11882-11988, 12002-12411, 12425-12757, 12773-13029, 13043-13074, 13088-13360, 13374-13993, 14007-14233, 14248-14808, 14822-14827, 14845-14859, 14873-15023, 15038-15061, 15075-15692, 15705-15740, 15750-15767, 15781-15806, 15819-15899, 15903-16101, 16115-16181, 16195-16955, 16958-17003, 17015-17026, 17041-17063, 17079-17290, 17304-17436, 17450-18001, 18015-18313, 18321-18337, 18353-18382, 18396-18740, 18756-19085, 19099-19145, 19159-19589, 19603-19778, 19799-20104, 20118-20121, 20135-20181, 20196-20318, 20330-20395, 20421-20841, 20855-21064, 21074-21098, 21143-21144, 21160-21222, 21233-21578, 21593-21663, 21677-21720, 21734-21744, 21758-21809, 21823-21890, 21904-21958, 21972-21980, 21994-22379, 22393-22593, 22607-23002, 23016-23455, 23481-23701, 23715-23822, 23836-23921, 23935-24163, 24177-25056, 25070-25116, 25137-25293, 25307-25582, 25596-26249, 26264-26411, 26433-26445, 26459-26460, 26474-27136, 27151-27610, 27625-28779, 28793-29203, 29217-29368, 29382-30064, 30078-30113, 30127-30402, 30416-30685, 30699-30710, 30724-30855, 30869-31127, 31144-31248, 31279-31416, 31430-31865, 31880-32010, 32026-32251, 32265-32325, 32335-32428, 32438-32460, 32474-32734, 32749-33413, 33427-33611, 33625-33679, 33694-34225, 34239-34254, 34268-34276, 34290-34396, 34410-34766, 34782-35056, 35070-36087, 36103-36273, 36287-36765, 36815-36853, 36867-36919, 36929-36958, 36968-36977, 36993-37034, 37050-37571, 37585-37634, 37646-37670, 37678-37836, 37850-37959, 37974-38129, 38143-38244, 38268-38426, 38440-38663, 38677-38764, 38778-38790, 38804-40091, 40106-40494, 40520-40550, 40564-40952, 40966-41402, 41416-41429, 41443-41566, 41580-41745, 41759-42124, 42138-42175, 42188-42232, 42255-42542, 42556-42622, 42637-42745, 42759-42853, 42867-42941, 42956-43012, 43026-43275, 43289-43371, 43385-43764, 43778-43796, 43810-44077, 44091-44206, 44228-44738, 44752-44795, 44802-44833, 44842-45186, 45192-45668, 45682-46341, 46355-46674, 46688-46715, 46729-46739, 46755-46768, 46783-47264, 47278-47981, 47995-47996, 48010-48463, 48477-48944, 48958-48982, 48996-49461, 49475-49502, 49506-49542, 49546-49574, 49588-49829, 49843-49895, 49905-49939, 49950-49972, 49986-50398, 50412-50590, 50604-50692, 50706-50746, 50760-51221, 51237-52185, 52199-52405, 52419-52500, 52514-52650, 52664-52677, 52692-52756, 52770-52921, 52935-52950, 52966-52982, 52997-53120, 53125-53148, 53162-53185, 53199-53229, 53232-53377, 53392-53425, 53439-53457, 53471-53729, 53769-53964, 53978-54153, 54167-54248, 54262-54399, 54413-54533, 54548-54770, 54784-54798, 54813-54908, 54935-54953, 54967-55071, 55085-55100, 55114-55225, 55239-55467, 55474-55518, 55533-55574, 55588-55605, 55607-56229, 56243-56360, 56374-56484, 56499-57256, 57270-57551, 57566-57612, 57626-58496, 58511-58708, 58733-59255, 59269-59294, 59308-59685, 59700-60336, 60350-60871, 60886-61387, 61401-62056, 62070-62092, 62106-62522, 62536-62568, 62595-62697, 62712-62831, 62846-62917, 62931-63209, 63213-63274, 63278-63283, 63293-63340, 89008-89015, 89017-89021, 89024-89025

SeqIDs w/o miR Seeds:

149, 153, 155, 157, 159-165, 170, 173-175, 177-178, 181-187, 189-192, 196-198, 200-201, 203-204, 206-213, 216, 218, 220-221, 225-226, 228, 230-233, 236-242, 244, 246-248, 250-252, 254-256, 258-259, 261, 263-264, 266-267, 271-280, 284-285, 287-289, 292-294, 296-302, 304-306, 309, 312, 318-326, 328-329, 333, 336-337, 343-344, 348, 350, 354-355, 357-358, 360-361, 363-365, 367-369, 371, 373-376, 378, 382-383, 388-389, 391-397, 401, 403-410, 413, 415-420, 422-424, 426-430, 433, 435-436, 440-441, 443, 446-448, 450-455, 457-458, 460-463, 466, 468, 470, 472-473, 476, 478, 482-486, 488-489, 494-502, 504, 506-510, 512-515, 518-522, 525, 527-530, 532, 535-537, 539, 541-542, 544-545, 548-549, 551, 553, 555, 557-562, 564, 569-573, 575, 577, 579, 581, 583, 585-586, 590, 592-595, 597, 599-600, 602, 604-607, 609, 612, 614-618, 620, 623-633, 635-637, 639-642, 644-648, 650, 652-657, 659, 661-667, 675-678, 680-681, 684-687, 689-692, 694-698, 700, 702, 706-710, 712-717, 720, 722, 724, 726-727, 729, 732-733, 736, 740, 742-743, 748, 751-752, 760-770, 772, 774, 776-784, 787-791, 794-797, 801, 804-805, 807, 809-812, 815, 818, 820, 825-831, 833, 835-837, 839, 842, 845, 847-849, 852, 854, 861, 865, 869, 874-876, 878, 881-883, 885-886, 892, 894-898, 901-908, 911-912, 918-925, 927-934, 938-939, 941, 943-944, 946, 948, 952, 954-955, 958-960, 962-966, 968, 971, 977, 980-981, 983-984, 986-991, 993, 996, 998-999, 1001, 1003-1005, 1007, 1015-1016, 1018-1021, 1025-1039, 1042, 1044-1053, 1055, 1057, 1061-1063, 1065-1066, 1068, 1070, 1072, 1076-1084, 1087, 1093, 1096-1101, 1105, 1121, 1124, 1126, 1128, 1131-1133, 1136-1139, 1141, 1143, 1145-1146, 1148, 1150-1159, 1163-1164, 1166, 1171, 1173-1174, 1177, 1179, 1182, 1184-1185, 1191, 1193, 1198-1201, 1204, 1206-1207, 1209-1210, 1212-1213, 1215-1216, 1218-1219, 1222, 1226, 1228-1231, 1234-1240, 1242-1246, 1248, 1251, 1253, 1255, 1257-1268, 1270-1272, 1275-1278, 1280, 1282-1283, 1285-1286, 1288-1289, 1291-1301, 1304-1308, 1311, 1313, 1316-1321, 1323-1324, 1328, 1332-1333, 1335-1337, 1339-1343, 1347-1348, 1350-1353, 1355-1360, 1363-1364, 1366-1369, 1372-1374, 1377-1378, 1380, 1382-1384, 1386, 1389-1390, 1392-1395, 1397, 1399-1401, 1403-1404, 1406-1410, 1412-1415, 1417-1419, 1424-1426, 1429-1432, 1435, 1438, 1441, 1443-1446, 1448-1449, 1451, 1453-1456, 1460-1461, 1463-1470, 1472-1474, 1476, 1478-1483, 1485-1486, 1488-1495, 1497-1498, 1500-1502, 1504-1507, 1513-1519, 1521-1530, 1532, 1534, 1538-1540, 1545-1548, 1550, 1553, 1555-1556, 1558-1560, 1563, 1565-1568, 1570, 1572-1576, 1578-1579, 1581, 1584-1586, 1588-1596, 1598-1600, 1604, 1606-1607, 1609-1610, 1612-1613, 1615-1616, 1618-1621, 1625-1626, 1628-1629, 1633, 1635-1644, 1649-1653, 1655-1656, 1658-1659, 1661-1663, 1665-1666, 1668-1670, 1673, 1677-1678, 1683, 1685-1686, 1688-1691, 1694, 1696, 1698, 1701-1702, 1704-1707, 1709, 1718-1721, 1723-1732, 1734-1737, 1740-1741, 1743, 1745, 1749-1750, 1753, 1759-1762, 1764-1767, 1769-1770, 1772-1773, 1776-1778, 1784, 1791, 1793-1795, 1797, 1800-1802, 1805-1808, 1814, 1816, 1818-1819, 1821, 1824, 1827, 1829-1830, 1832, 1834, 1837-1841, 1843-1844, 1846, 1850, 1852-1855, 1858, 1860-1864, 1866-1871, 1873-1874, 1876-1877, 1879-1881, 1883, 1885-1894, 1898, 1906-1909, 1911-1912, 1914, 1916-1918, 1920, 1924, 1927, 1929-1930, 1933, 1937-1940, 1946, 1949, 1953-1956, 1958-1959, 1961, 1963-1964, 1966, 1971, 1973, 1975-1976, 1978, 1980, 1982-1983, 1985, 1990-1992, 1994-2004, 2011-2019, 2021-2022, 2024, 2026-2029, 2031, 2033-2036, 2038-2045, 2047-2048, 2050-2051, 2058, 2062, 2069, 2073, 2076, 2080, 2087-2089, 2092, 2094, 2097-2099, 2101-2102, 2104-2105, 2107-2110, 2112, 2117-2122, 2125-2127, 2129, 2131, 2141, 2144-2148, 2153-2154, 2157-2161, 2166-2171, 2173, 2176-2185, 2187-2189, 2191-2193, 2195, 2197-2198, 2200-2214, 2216, 2218-2221, 2224-2226, 2229, 2231, 2233, 2235-2240, 2247, 2249-2252, 2256-2260, 2262, 2266-2270, 2272-2276, 2280-2283, 2285, 2287, 2289, 2291-2302, 2304-2305, 2307-2309, 2311-2322, 2324-2329, 2331, 2334-2335, 2337-2338, 2341-2342, 2344-2347, 2349-2352, 2355-2356, 2358, 2361-2362, 2366-2367, 2369-2373, 2375-2377, 2379-2380, 2382-2387, 2389, 2392-2397, 2399-2402, 2404-2410, 2414, 2418-2424, 2426, 2428, 2430-2438, 2440-2441, 2443, 2445-2447, 2449-2453, 2455-2463, 2467-2469, 2473, 2475-2476, 2479, 2481-2482, 2484-2487, 2489-2491, 2493-2494, 2499, 2501, 2505-2506, 2510, 2512-2513, 2515-2516, 2519-2527, 2529, 2532-2541, 2544, 2547-2548, 2551, 2553, 2555-2556, 2558-2559, 2561, 2563, 2565-2568, 2570-2571, 2573, 2575-2576, 2579-2581, 2583-2585, 2587-2601, 2603-2609, 2613-2620, 2622, 2624-2626, 2628-2632, 2635-2640, 2642-2643, 2645, 2649-2650, 2653-2655, 2658-2666, 2669, 2671-2673, 2675, 2678-2681, 2683, 2686, 2691-2697, 2699, 2704, 2707-2708, 2710-2711, 2713-2722, 2725-2732, 2735-2736, 2738, 2743, 2745-2746, 2748, 2750, 2752, 2756, 2759, 2763-2766, 2769-2770, 2773-2777, 2779-2782, 2785-2786, 2788-2793, 2796-2798, 2800, 2802, 2804, 2806, 2809, 2811, 2813-2814, 2817-2832, 2834, 2838, 2842, 2844, 2847, 2849-2859, 2862, 2865, 2867-2868, 2872, 2874-2883, 2885-2887, 2890-2892, 2895-2903, 2905-2906, 2909-2911, 2913-2916, 2918-2920, 2922-2924, 2927-2931, 2934-2937, 2940, 2942, 2946-2954, 2956-2958, 2960-2969, 2973, 2975-2976, 2983, 2985-2987, 2990-2995, 2998-2999, 3002-3004, 3007, 3009-3011, 3013-3017, 3019-3021, 3023-3030, 3032-3033, 3035-3037, 3039, 3041-3043, 3046, 3052-3053, 3055-3058, 3060, 3063-3069, 3071, 3073-3077, 3079, 3081, 3084, 3087-3089, 3091-3092, 3094, 3096-3098, 3101, 3103-3111, 3114, 3116-3117, 3119-3120, 3122-3125, 3129, 3131-3132, 3134-3136, 3138, 3140, 3145-3146, 3148, 3151-3152, 3155-3156, 3162-3163, 3165-3167, 3171-3172, 3174-3178, 3181, 3184, 3188-3190, 3192-3193, 3196-3210, 3212-3214, 3221, 3225-3229, 3231, 3235-3238, 3240-3246, 3249-3253, 3256-3258, 3260-3264, 3271-3273, 3275-3276, 3278-3280, 3282-3284, 3286, 3288, 3294-3298, 3300-3302, 3304-3305, 3308-3311, 3313-3320, 3325-3328, 3330-3332, 3335-3337, 3342-3343, 3345-3346, 3348-3349, 3353, 3355-3358, 3362, 3365, 3368, 3370, 3372, 3376-3378, 3380, 3383-3384, 3387, 3389-3390, 3394, 3396-3397, 3399-3404, 3406-3411, 3415, 3417-3418, 3420, 3423-3426, 3428-3430, 3432-3433, 3435-3444, 3446-3448, 3450-3457, 3461, 3464, 3467-3471, 3473-3481, 3485-3492, 3494-3497, 3499-3503, 3505, 3509-3510, 3512-3513, 3518, 3521-3524, 3529-3531, 3533-3537, 3539, 3541-3545, 3547-3553, 3555-3558, 3560-3561, 3564-3567, 3569-3572, 3575-3577, 3579, 3582-3585, 3589-3597, 3599-3600, 3602-3603, 3605-3608, 3610, 3612-3615, 3617-3621, 3623-3624, 3626-3627, 3629-3633, 3635, 3638-3641, 3644-3649, 3654-3675, 3678-3679, 3682-3683, 3685, 3687-3692, 3694-3698, 3701-3705, 3707, 3709, 3711-3712, 3714-3717, 3719, 3721, 3723, 3728, 3730-3731, 3733-3735, 3737-3740, 3742-3745, 3747, 3749, 3751-3752, 3754-3759, 3763-3764, 3766-3767, 3769, 3772-3780, 3782-3784, 3787, 3789, 3791-3792, 3794, 3798, 3800-3805, 3807-3808, 3815-3818, 3820-3824, 3829, 3831-3833, 3835-3840, 3842, 3845-3850, 3853-3858, 3860, 3862, 3864, 3866, 3868-3870, 3872, 3874-3882, 3885-3887, 3891-3894, 3896-3897, 3899-3900, 3902-3904, 3907-3912, 3917-3919, 3922-3923, 3927, 3929-3930, 3932, 3936, 3938, 3940, 3942-3944, 3946-3951, 3954-3956, 3959, 3962-3965, 3968, 3970-3972, 3975-3977, 3979, 3982-3986, 3988, 3990-3994, 3996-3999, 4002, 4004-4010, 4012-4014, 4016-4018, 4020, 4022-4023, 4027, 4030-4033, 4035-4041, 4043-4044, 4046-4048, 4054-4058, 4060-4064, 4066, 4069-4071, 4074-4076, 4078-4079, 4082, 4084, 4086-4088, 4090-4094, 4096-4099, 4101-4102, 4105-4107, 4110-4111, 4113-4114, 4116-4117, 4119-4122, 4126, 4128-4130, 4132-4133, 4136-4138, 4141-4143, 4147-4150, 4152-4153, 4157, 4159-4161, 4163-4165, 4169, 4171-4172, 4174-4175, 4178-4180, 4182, 4184-4193, 4196, 4200-4204, 4207-4208, 4210-4211, 4214, 4216-4220, 4224-4225, 4227-4228, 4235-4237, 4240-4241, 4243-4247, 4249, 4251, 4254, 4256, 4259-4261, 4263-4267, 4269-4271, 4273-4274, 4276, 4282-4285, 4288, 4291, 4293-4294, 4297-4298, 4301-4304, 4307-4308, 4310-4311, 4315-4321, 4323-4324, 4326, 4328-4330, 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59661-59662, 59664-59675, 59679, 59681-59683, 59685-59686, 59692, 59694-59698, 59702-59706, 59708, 59711-59714, 59716-59719, 59722, 59724-59725, 59727-59736, 59739-59746, 59748, 59751-59752, 59754-59755, 59757, 59760-59764, 59766, 59769, 59771, 59773-59774, 59776-59783, 59785, 59787-59788, 59790-59791, 59793-59795, 59797-59799, 59801-59804, 59806-59809, 59811-59819, 59821-59823, 59825-59832, 59835, 59837, 59839-59841, 59848-59857, 59859-59860, 59862-59866, 59868-59870, 59874-59876, 59878, 59880-59881, 59884-59886, 59888-59895, 59898, 59900, 59903-59904, 59906-59916, 59918-59919, 59921-59922, 59924-59935, 59937-59939, 59941, 59943, 59945, 59947, 59949, 59951-59962, 59964, 59966-59968, 59970, 59974, 59983-59987, 59989, 59991, 59993, 59995-59998, 60000, 60002-60003, 60005-60006, 60014, 60016-60017, 60020-60026, 60028-60030, 60034-60035, 60037-60042, 60044-60045, 60048, 60052-60054, 60056-60058, 60061-60070, 60073, 60076-60077, 60079-60081, 60083, 60085, 60087, 60089-60096, 60098-60101, 60103, 60105-60116, 60119-60125, 60131-60132, 60134-60137, 60139-60140, 60142-60150, 60152-60155, 60157-60158, 60161-60162, 60165-60167, 60169-60170, 60172-60174, 60179-60181, 60183, 60185-60189, 60191, 60193, 60196, 60199, 60201-60202, 60204, 60208-60214, 60216-60219, 60221-60228, 60234-60237, 60241-60247, 60250-60252, 60255, 60259-60265, 60267, 60271-60274, 60276-60277, 60280-60288, 60290, 60292-60294, 60296-60299, 60303, 60306, 60309, 60313-60314, 60317, 60319-60325, 60327-60334, 60337, 60340-60341, 60343-60346, 60348, 60351-60357, 60364-60375, 60377-60382, 60385-60386, 60388, 60390, 60395, 60397, 60399-60401, 60403, 60405-60407, 60410, 60412-60413, 60415, 60417-60420, 60422-60426, 60430-60431, 60433-60437, 60439-60444, 60446-60459, 60462, 60464-60465, 60467, 60470, 60473, 60475-60482, 60484-60486, 60489-60493, 60495-60500, 60502-60503, 60505-60506, 60514-60516, 60518, 60522-60523, 60525-60527, 60529-60530, 60532-60537, 60540-60541, 60544, 60547-60556, 60559, 60561-60564, 60566-60567, 60570-60573, 60575-60577, 60579-60580, 60582-60583, 60585-60587, 60589-60593, 60597-60599, 60601-60604, 60606, 60608-60611, 60613-60614, 60616-60620, 60624-60626, 60628-60629, 60632-60637, 60639, 60641-60642, 60644-60649, 60651, 60654, 60657-60658, 60660-60662, 60666-60668, 60671-60672, 60674-60677, 60679, 60681-60686, 60691-60693, 60695, 60700, 60705-60712, 60717, 60720-60723, 60727-60728, 60730-60734, 60737, 60739-60742, 60744-60747, 60750, 60754, 60756-60760, 60762-60764, 60768-60777, 60780-60784, 60786-60789, 60791, 60793, 60795, 60797, 60799-60800, 60804, 60806, 60808-60810, 60813-60816, 60818-60822, 60824, 60827-60836, 60839, 60841-60847, 60849, 60853-60856, 60858-60860, 60862, 60865-60866, 60868, 60872, 60877-60880, 60882-60888, 60890-60895, 60897-60899, 60903-60908, 60910-60913, 60915-60916, 60918-60919, 60922-60923, 60925-60926, 60928-60929, 60931-60937, 60944, 60946-60947, 60949-60953, 60956, 60958-60964, 60966-60967, 60970-60973, 60975-60976, 60983, 60985, 60987-60988, 60991-60997, 60999-61000, 61002, 61004-61005, 61007-61008, 61012-61017, 61020-61026, 61029-61045, 61047-61048, 61050, 61052, 61056-61057, 61060, 61062, 61064-61068, 61070-61072, 61074-61076, 61078, 61080-61084, 61086-61089, 61097-61102, 61104-61110, 61115-61120, 61122, 61124-61126, 61129-61130, 61132-61133, 61135-61140, 61142-61144, 61148, 61150-61155, 61159, 61163-61164, 61166-61170, 61172, 61174, 61176-61184, 61187, 61191-61198, 61200, 61202-61207, 61209-61210, 61214-61215, 61217-61221, 61223-61224, 61226, 61228-61231, 61234-61236, 61238-61239, 61241, 61244, 61246, 61248, 61250-61252, 61254-61259, 61261, 61264-61265, 61267-61269, 61271-61274, 61276, 61278, 61280-61282, 61285, 61287, 61289, 61291, 61293-61300, 61302-61303, 61305-61307, 61309, 61311-61312, 61314, 61316, 61318, 61320-61322, 61325, 61327-61328, 61330-61337, 61340-61345, 61349-61351, 61355, 61357-61361, 61363-61365, 61368, 61373-61374, 61377, 61382, 61385, 61387-61388, 61390, 61392-61395, 61397-61398, 61400-61403, 61405-61408, 61410, 61413-61416, 61418-61424, 61428, 61432, 61434-61435, 61437-61441, 61443-61444, 61448, 61450-61456, 61458-61462, 61464, 61467-61470, 61472, 61474-61478, 61480-61481, 61483-61484, 61487-61488, 61492, 61494, 61497, 61499-61503, 61505-61511, 61513-61519, 61521, 61523, 61525-61526, 61529, 61531-61532, 61534, 61536, 61540, 61543-61548, 61550-61559, 61561, 61563-61564, 61566-61577, 61579-61580, 61582, 61584, 61586-61587, 61589-61590, 61592-61600, 61602, 61606-61607, 61612-61614, 61616, 61619-61628, 61630-61633, 61637-61640, 61642, 61644, 61647-61652, 61656-61659, 61663-61665, 61667-61669, 61671-61676, 61679, 61682-61684, 61687-61688, 61690-61696, 61698, 61700, 61702-61703, 61705-61707, 61709, 61711-61712, 61714, 61716, 61718, 61720-61734, 61737-61739, 61741-61742, 61744-61752, 61754, 61756-61759, 61761-61763, 61765, 61768-61769, 61773-61776, 61778, 61780, 61782-61787, 61790-61796, 61799-61801, 61805-61806, 61813, 61815-61820, 61822-61823, 61825-61827, 61830-61831, 61834-61842, 61846-61850, 61854, 61856, 61858, 61860-61861, 61864-61866, 61868-61869, 61871-61875, 61877-61883, 61885-61894, 61898, 61901, 61903, 61906, 61908-61909, 61911, 61913, 61915-61916, 61918-61921, 61923, 61925-61926, 61929, 61931, 61934-61935, 61937-61944, 61946, 61950-61953, 61955, 61959-61962, 61965-61967, 61969-61972, 61974-61976, 61979, 61983, 61985, 61987-61989, 61991-61994, 61997-61998, 62001, 62004-62005, 62009-62011, 62013, 62016-62018, 62020, 62026-62027, 62029, 62032, 62034, 62037, 62041-62043, 62046-62047, 62049-62056, 62060-62061, 62066, 62069-62072, 62074-62077, 62079-62081, 62085-62089, 62091-62094, 62098-62102, 62106-62107, 62109, 62111, 62114, 62116-62117, 62119, 62121-62124, 62126, 62128, 62130, 62134, 62136-62138, 62140, 62142, 62144-62145, 62148, 62150-62151, 62154-62156, 62159-62160, 62162-62163, 62165-62168, 62170-62171, 62173-62177, 62181-62182, 62185-62190, 62193-62198, 62202, 62205-62207, 62210, 62213-62222, 62224, 62226, 62230-62231, 62233-62238, 62240-62243, 62245-62247, 62251-62253, 62255, 62257, 62259-62263, 62266-62271, 62277-62281, 62283-62292, 62294-62298, 62302-62303, 62305-62306, 62308-62310, 62313-62314, 62316-62319, 62321, 62323, 62325-62335, 62337-62338, 62340-62349, 62351-62352, 62356-62358, 62362, 62364-62368, 62370, 62372-62373, 62378-62381, 62383-62385, 62388-62396, 62398, 62401-62403, 62405-62406, 62410-62414, 62416-62417, 62419-62421, 62423, 62425-62428, 62430, 62435-62439, 62442-62445, 62447-62448, 62450, 62453-62461, 62464-62478, 62480, 62482-62492, 62495-62500, 62503-62504, 62506-62507, 62509-62510, 62512-62516, 62518-62520, 62522-62523, 62525, 62531-62532, 62534-62535, 62537-62539, 62542, 62544-62548, 62550-62557, 62559-62563, 62565-62568, 62571-62573, 62576, 62578-62579, 62585-62586, 62590, 62592, 62594-62595, 62597-62598, 62603, 62605-62610, 62612-62616, 62621-62623, 62625-62627, 62630-62634, 62636-62638, 62640-62642, 62644-62651, 62654-62656, 62658, 62660-62662, 62664-62665, 62667, 62670-62671, 62674-62675, 62677, 62681-62684, 62686-62689, 62692-62697, 62703-62705, 62708, 62713-62716, 62720, 62723-62726, 62728, 62730, 62732, 62737, 62739-62744, 62747-62756, 62758-62759, 62762-62763, 62767-62770, 62772, 62775, 62777-62778, 62780, 62784, 62786, 62788-62798, 62800, 62802-62804, 62806-62809, 62812-62815, 62817, 62825, 62828-62831, 62835, 62837-62838, 62840, 62844, 62846, 62848-62852, 62860-62864, 62869-62871, 62873, 62877, 62882-62884, 62886-62887, 62893-62894, 62896-62898, 62900-62901, 62903-62905, 62910-62911, 62915, 62917, 62919, 62924-62931, 62933, 62936, 62938-62939, 62942-62959, 62961-62962, 62965, 62967-62979, 62983, 62985-62986, 62988-62989, 62991, 62994-62996, 62999, 63001, 63003, 63005-63007, 63010-63011, 63013, 63016, 63020-63022, 63024-63028, 63030, 63032-63043, 63046-63048, 63051-63054, 63056-63061, 63065, 63067-63068, 63070-63081, 63083-63087, 63090-63091, 63093-63098, 63100-63102, 63104-63108, 63110-63111, 63113-63114, 63116-63117, 63119-63121, 63123-63127, 63131-63134, 63136, 63138-63139, 63142-63148, 63150-63151, 63153-63154, 63156-63163, 63165-63172, 63179, 63181, 63183, 63185-63187, 63189, 63192, 63195, 63201-63202, 63204-63206, 63208-63211, 63215, 63217, 63219-63221, 63224, 63226-63228, 63233, 63236, 63239, 63242-63248, 63250-63253, 63257, 63259, 63261-63265, 63267, 63271-63272, 63274, 63279, 63281-63284, 63286-63291, 63295-63303, 63305, 63309, 63311, 63313-63317, 63321-63327, 63329-63331, 63334-63340, 89008, 89010-89012, 89014-89016, 89018-89019, 89021, 89024-89025

Single Strand Oligonucleotides (Sense Strand of Target Gene)

SeqID range: 63196-89007, 89020-89025

SeqIDs w/o G Runs:

63196-63209, 63213-63274, 63278-63283, 63293-63348, 63362-63367, 63381-63425, 63439-63496, 63510-63525, 63540-63573, 63597-63601, 63615-63652, 63666-63694, 63714-63774, 63795-63806, 63820-63909, 63923-63978, 63993-64000, 64014-64017, 64031-64036, 64059-64107, 64122-64130, 64158-64163, 64178-64182, 64196-64219, 64233-64285, 64299-64306, 64321, 64347-64418, 64441-64533, 64567-64569, 64583-64739, 64761-64830, 64844-64866, 64880-64893, 64908-65033, 65047-65055, 65087-65088, 65102-65129, 65143-65214, 65240-65288, 65318-65401, 65415-65418, 65442-65479, 65497-65521, 65541-65555, 65574-65630, 65651-65686, 65700-65871, 65886-66118, 66132-66151, 66165-66227, 66241-66317, 66331-66462, 66476-66634, 66648-66789, 66804-66913, 66927-67116, 67131-67258, 67272-67332, 67358-67364, 67379-67665, 67680-67697, 67711-68077, 68091-68153, 68167-68522, 68536-68752, 68766-68823, 68837-68900, 68914-68988, 69002-69389, 69403-69660, 69674-69955, 69969-70150, 70165-70300, 70314-70586, 70600-70605, 70619-70662, 70676-70768, 70783-70850, 70863-70903, 70918-70966, 70975-71391, 71417-71512, 71527-71664, 71678-71722, 71736-71770, 71784-71791, 71805-71831, 71845-72139, 72153-72223, 72237-72312, 72326-72367, 72382-72420, 72434-72444, 72458-72672, 72681-72696, 72710-72737, 72751-72831, 72845-72910, 72925-72947, 72961-72976, 72990-73027, 73041-73629, 73643-73668, 73682-74201, 74215-74236, 74251-74271, 74286-74329, 74336-74425, 74433-74554, 74568-74785, 74799-75385, 75399-75521, 75537-75608, 75622-75754, 75768-75901, 75916-76064, 76078, 76093-76113, 76127-76629, 76643-76677, 76691-76780, 76794-76958, 76972-77088, 77102-77212, 77226-77420, 77434-77974, 77988-78057, 78073-78415, 78429-78456, 78471-78497, 78512-78589, 78603-78762, 78776-79360, 79374-79407, 79421-79895, 79909-79932, 79946-79960, 79983-80031, 80036-80070, 80084-80118, 80132-80283, 80299-80985, 80999-81129, 81156-81247, 81261-81434, 81448-81573, 81587-81963, 81977-81988, 82002-82008, 82022-82113, 82127-82176, 82191-82210, 82224-82225, 82239-82396, 82410-82853, 82868-83145, 83159-83564, 83579-83712, 83726-83838, 83852-83895, 83909-83976, 83990-84145, 84171-84571, 84580-84604, 84612-84702, 84716-84881, 84896-85069, 85083-85442, 85456-85918, 85932-86147, 86163-86359, 86405-86409, 86423-86429, 86443-86445, 86459-86625, 86639-87229, 87237-87314, 87320-87333, 87335-87394, 87404-87470, 87484-87597, 87611-87969, 87983-88313, 88327-88538, 88560-88659, 88673-88753, 88777-88790, 88804-88879, 88893-89007, 89020-89025

SeqIDs w/o miR Seeds:

63201-63202, 63204-63206, 63208-63211, 63215, 63217, 63219-63221, 63224, 63226-63228, 63233, 63236, 63239, 63242-63248, 63250-63253, 63257, 63259, 63261-63265, 63267, 63271-63272, 63274, 63279, 63281-63284, 63286-63291, 63295-63303, 63305, 63309, 63311, 63313-63317, 63321-63327, 63329-63331, 63334-63348, 63350-63358, 63361-63364, 63366-63374, 63380, 63382, 63384-63388, 63393-63394, 63398, 63400-63403, 63407-63415, 63417-63418, 63420-63424, 63426, 63429-63431, 63433-63434, 63436, 63441, 63443-63444, 63446-63451, 63453-63456, 63459, 63461, 63463, 63466, 63468, 63472, 63475-63477, 63479-63484, 63486, 63488-63490, 63493-63496, 63498-63499, 63501-63504, 63506-63507, 63509-63510, 63513, 63515-63516, 63520, 63525, 63529-63530, 63532-63534, 63539, 63541-63544, 63546-63548, 63550-63554, 63558-63559, 63562-63563, 63565, 63567, 63569-63570, 63572, 63579, 63581, 63589, 63595, 63597-63599, 63601-63604, 63608, 63611, 63613, 63617, 63620-63627, 63629, 63633-63636, 63638-63640, 63642, 63645-63648, 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87861-87864, 87868-87876, 87878-87880, 87882-87887, 87889, 87891-87896, 87898-87903, 87905, 87907, 87909-87911, 87913-87915, 87919, 87923, 87925-87930, 87932-87941, 87944-87949, 87951-87957, 87959-87963, 87966, 87968, 87970-87972, 87976-87977, 87979-87980, 87983, 87985-87987, 87989-87990, 87994-88001, 88003-88005, 88007, 88009-88021, 88024, 88026-88029, 88031, 88034-88039, 88042, 88045-88046, 88048-88052, 88054-88058, 88060-88061, 88064-88068, 88072-88082, 88084-88089, 88091, 88093-88097, 88099-88100, 88103-88104, 88106, 88109, 88111-88114, 88116-88119, 88122-88125, 88127, 88129-88130, 88132, 88134, 88137-88138, 88141, 88145-88150, 88152-88153, 88155-88158, 88160-88166, 88168-88172, 88174-88178, 88181-88184, 88187-88188, 88190, 88192-88194, 88196, 88198-88199, 88201-88205, 88207-88214, 88218-88219, 88223, 88225-88227, 88229-88237, 88241-88243, 88245, 88247-88250, 88252, 88260-88271, 88273-88274, 88277, 88279-88280, 88282-88284, 88287, 88290-88291, 88293-88294, 88296, 88299, 88301-88304, 88306-88307, 88310-88311, 88315-88320, 88324, 88327-88328, 88330-88331, 88333-88334, 88336-88338, 88340-88342, 88345-88347, 88350-88353, 88356-88363, 88365, 88367-88370, 88372, 88375-88383, 88385-88386, 88388-88389, 88395-88398, 88400, 88403-88407, 88412, 88414-88415, 88423-88428, 88432-88434, 88436-88438, 88443-88446, 88449, 88452, 88455, 88457, 88459-88460, 88462-88464, 88467-88471, 88481-88483, 88485, 88488, 88490-88491, 88494-88499, 88501, 88503, 88509-88510, 88512, 88514-88518, 88520, 88523, 88525-88529, 88532-88534, 88542-88543, 88546-88547, 88550, 88556-88557, 88559-88562, 88564-88566, 88569, 88571, 88574-88577, 88581, 88583-88584, 88586-88588, 88590-88594, 88596, 88598-88610, 88612-88613, 88615-88616, 88623, 88625-88628, 88633-88635, 88638-88639, 88641-88643, 88646-88657, 88661, 88665-88666, 88669-88670, 88672, 88674-88680, 88682, 88684-88686, 88689-88695, 88697-88698, 88700-88708, 88710-88713, 88720, 88722-88723, 88725, 88728-88732, 88738, 88740-88742, 88744-88749, 88751-88753, 88757-88758, 88761, 88764, 88767, 88771, 88778-88781, 88791-88794, 88797, 88801-88802, 88804-88807, 88809, 88811, 88814-88816, 88818, 88820-88826, 88832-88834, 88837, 88839-88843, 88845, 88847-88850, 88852-88855, 88857, 88860-88862, 88864-88865, 88867, 88869-88872, 88874, 88877-88887, 88892-88900, 88902-88905, 88910, 88913, 88915, 88919-88921, 88923-88926, 88928-88930, 88932-88936, 88938-88940, 88942-88943, 88945, 88947, 88950-88953, 88956-88959, 88962, 88964-88965, 88967-88969, 88973-88974, 88976-88979, 88981-88982, 88984-88991, 88994, 89000-89001, 89003-89006, 89021-89025

The foregoing written specification is considered to be sufficient to enable one skilled in the art to practice the invention. The present invention is not to be limited in scope by examples provided, since the examples are intended as a single illustration of one aspect of the invention and other functionally equivalent embodiments are within the scope of the invention. Various modifications of the invention in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and fall within the scope of the appended claims. The advantages and objects of the invention are not necessarily encompassed by each embodiment of the invention. 

1. A single stranded oligonucleotide having a sequence 5′-X-Y-Z, wherein X is any nucleotide, Y is a nucleotide sequence of 6 nucleotides in length that is not a seed sequence of a human microRNA, and Z is a nucleotide sequence of 1-23 nucleotides in length, wherein the single stranded oligonucleotide is complementary with at least 8 consecutive nucleotides of a PRC2-associated region of a PTEN gene.
 2. The single stranded oligonucleotide of claim 1, wherein the oligonucleotide does not comprise three or more consecutive guanosine nucleotides.
 3. The single stranded oligonucleotide of claim 1, wherein the oligonucleotide does not comprise four or more consecutive guanosine nucleotides.
 4. The single stranded oligonucleotide of claim 1, wherein the oligonucleotide is 8 to 30 nucleotides in length.
 5. The single stranded oligonucleotide of claim 1, wherein the oligonucleotide is 8 to 10 nucleotides in length and all but 1, 2, or 3 of the nucleotides of the complementary sequence of the PRC2-associated region are cytosine or guano sine nucleotides.
 6. The single stranded oligonucleotide of claim 1, wherein at least one nucleotide of the oligonucleotide is a nucleotide analogue.
 7. The single stranded oligonucleotide of claim 6, wherein the at least one nucleotide analogue results in an increase in Tm of the oligonucleotide in a range of 1 to 5° C. compared with an oligonucleotide that does not have the at least one nucleotide analogue.
 8. The single stranded oligonucleotide of claim 1, wherein at least one nucleotide of the oligonucleotide comprises a 2′ O-methyl.
 9. The single stranded oligonucleotide of claim 1, wherein each nucleotide of the oligonucleotide comprises a 2′ O-methyl.
 10. The single stranded oligonucleotide of claim 1, wherein the oligonucleotide comprises at least one ribonucleotide, at least one deoxyribonucleotide, or at least one bridged nucleotide.
 11. The single strand oligonucleotide of claim 10, wherein the bridged nucleotide is a LNA nucleotide, a cEt nucleotide or a ENA modified nucleotide.
 12. The single stranded oligonucleotide of claim 1, wherein each nucleotide of the oligonucleotide is a LNA nucleotide.
 13. The single stranded oligonucleotide of claim 1, wherein the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and 2′-fluoro-deoxyribonucleotides.
 14. The single stranded oligonucleotide of claim 1, wherein the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and 2′-O-methyl nucleotides.
 15. The single stranded oligonucleotide of claim 1, wherein the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and ENA nucleotide analogues.
 16. The single stranded oligonucleotide of claim 1, wherein the nucleotides of the oligonucleotide comprise alternating deoxyribonucleotides and LNA nucleotides.
 17. The single stranded oligonucleotide of claim 13, wherein the 5′ nucleotide of the oligonucleotide is a deoxyribonucleotide.
 18. The single stranded oligonucleotide of claim 1, wherein the nucleotides of the oligonucleotide comprise alternating LNA nucleotides and 2′-O-methyl nucleotides.
 19. The single stranded oligonucleotide of claim 18, wherein the 5′ nucleotide of the oligonucleotide is a LNA nucleotide.
 20. The single stranded oligonucleotide of claim 1, wherein the nucleotides of the oligonucleotide comprise deoxyribonucleotides flanked by at least one LNA nucleotide on each of the 5′ and 3′ ends of the deoxyribonucleotides.
 21. The single stranded oligonucleotide of claim 1, further comprising phosphorothioate internucleotide linkages between at least two nucleotides.
 22. The single stranded oligonucleotide of claim 21, further comprising phosphorothioate internucleotide linkages between all nucleotides.
 23. The single stranded oligonucleotide of claim 1, wherein the nucleotide at the 3′ position of the oligonucleotide has a 3′ hydroxyl group.
 24. The single stranded oligonucleotide of claim 1, wherein the nucleotide at the 3′ position of the oligonucleotide has a 3′ thiophosphate.
 25. The single stranded oligonucleotide of claim 1, further comprising a biotin moiety conjugated to the 5′ nucleotide.
 26. A single stranded oligonucleotide comprising a region of complementarity that is complementary with at least 8 consecutive nucleotides of a PRC2-associated region of a PTEN gene, wherein the oligonucleotide has at least one of: a) a sequence that is 5′X-Y-Z, wherein X is any nucleotide and wherein X is anchored at the 5′ end of the oligonucleotide, Y is a nucleotide sequence of 6 nucleotides in length that is not a human seed sequence of a microRNA, and Z is a nucleotide sequence of 1 to 23 nucleotides in length; b) a sequence that does not comprise three or more consecutive guanosine nucleotides; c) a sequence that has less than a threshold level of sequence identity with every sequence of nucleotides, of equivalent length to the second nucleotide sequence, that are between 50 kilobases upstream of a 5′-end of an off-target gene and 50 kilobases downstream of a 3′-end of the off-target gene; d) a sequence that is complementary to a PRC2-associated region that encodes an RNA that forms a secondary structure comprising at least two single stranded loops; and/or e) a sequence that has greater than 60% G-C content.
 27. The single stranded oligonucleotide of claim 26, wherein the oligonucleotide has the sequence 5′X-Y-Z and wherein the oligonucleotide is 8-50 nucleotides in length.
 28. A composition comprising a single stranded oligonucleotide of claim 1 and a carrier.
 29. A composition comprising a single stranded oligonucleotide of claim 1 in a buffered solution.
 30. A composition of claim 28, wherein the oligonucleotide is conjugated to the carrier.
 31. The composition of claim 30, wherein the carrier is a peptide.
 32. The composition of claim 30, wherein the carrier is a steroid.
 33. A pharmaceutical composition comprising a composition of claim 28 and a pharmaceutically acceptable carrier.
 34. A kit comprising a container housing the composition of claim
 28. 35. A method of increasing expression of a PTEN gene in a cell, the method comprising delivering the single stranded oligonucleotide of claim 1 into the cell.
 36. The method of claim 35, wherein delivery of the single stranded oligonucleotide into the cell results in a level of expression of a PTEN gene that is at least 50% greater than a level of expression of the PTEN gene in a control cell that does not comprise the single stranded oligonucleotide.
 37. A method increasing levels of a PTEN gene in a subject, the method comprising administering the single stranded oligonucleotide of claim 1 to the subject.
 38. A method of treating a condition associated with decreased levels of a PTEN gene in a subject, the method comprising administering the single stranded oligonucleotide of claim 1 to the subject.
 39. The method of claim 38, wherein the condition is cancer. 